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AT1G27880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEAD/DEAH box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT4G35740.1); Has 41244 Blast hits to 39032 proteins in 2984 species: Archae - 762; Bacteria - 21282; Metazoa - 5401; Fungi - 4173; Plants - 3671; Viruses - 588; Other Eukaryotes - 5367 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G27880-MONOMEREC:3.6.4.12eggNOG:COG0514eggNOG:KOG0351
EMBL:AC079280EMBL:AJ421618EMBL:AK226619EMBL:CP002684
EnsemblPlants:AT1G27880EnsemblPlants:AT1G27880.1entrez:839681Gene3D:3.40.50.300
GeneID:839681Genevisible:Q0WVW7GO:GO:0003676GO:GO:0005524
GO:GO:0005634GO:GO:0006310GO:GO:0008026GO:GO:0042631
Gramene:AT1G27880.1hmmpanther:PTHR13710hmmpanther:PTHR13710:SF76HOGENOM:HOG000264957
InParanoid:Q0WVW7InterPro:IPR001650InterPro:IPR002464InterPro:IPR004589
InterPro:IPR011545InterPro:IPR014001InterPro:IPR027417iPTMnet:Q0WVW7
KEGG:ath:AT1G27880KO:K10730OMA:GVDEYAVPaxDb:Q0WVW7
Pfam:PF00270Pfam:PF00271Pfam:Q0WVW7Pfscan:PS51192
Pfscan:PS51194PhylomeDB:Q0WVW7PRIDE:Q0WVW7PRO:PR:Q0WVW7
PROSITE:PS00690PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:Q0WVW7
Proteomes:UP000006548RefSeq:NP_174109.2scanprosite:PS00690SMART:SM00487
SMART:SM00490SMR:Q0WVW7STRING:3702.AT1G27880.1SUPFAM:SSF52540
TAIR:AT1G27880TIGRfam:TIGR00614TIGRFAMs:TIGR00614UniGene:At.40984
UniProt:Q0WVW7
Coordinates (TAIR10) chr1:+:9708940..9713901
Molecular Weight (calculated) 100760.00 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.21
Length 911 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)