AT4G18470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : negative regulator of systemic acquired resistance (SNI1) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Negative regulator of systemic acquired resistance (SAR), repressor of pathogenesis-related PR gene expression which is removed by NPR1 upon induction of SAR. Encodes leucine-rich nuclear protein. Conserved in plants, with putative orthologs found in several plant species. Many NPR1-dependent PR gene are specifically derepressed in the sni1 mutant. The structural similarity of SNI1 to Armadillo repeat proteins implies that SNI1 may form a scaffold for interaction with proteins that modulate transcription. Histone modification may be involved in SNI1-mediated repression of PR genes. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUPPRESSOR OF NPR1-1, INDUCIBLE 1 (SNI1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10192984..10195511 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48815.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.11 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||
| Length | 432 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKETKGNNN TSRVMSGYGG SLEANTLAMI DSTGAKDSRD ANEDRLQYLE AVRAASLVPE NGIPPTNKMY QAIFRILRFG KTLELITASF QLLTQLHQRF 101: PWVYVSDSAD QLDIVDEAWS PFNFGSDVDS DEKDLSVRSL FLQQLIQNMN KRVNESEESD LKILGNMFLF KYLAHVLKLD FTPRNQVYEE TMNWSLLKES 201: FLNLLLASRK VNFKLLMKDY LSTMCASIDA DEKSISLVEL HKDMLTAMKE LLVMIMELDT SKKKADLEGI TSRGDGVRTP AMEIILDELT YDGYLLSKFL 301: QVFDDPKWKL EIVLQYLTKY IPKPVVRTRR TTVPQAEDSK TLNGILKTFS NGTNPKNITK KIGPDIVQIL IGHAFLARLT FSDPHEGDSI SEICSSIISA 401: FTSLKRVDQK IEILPFGKEV LFTAGMVLKA KA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)