AT1G32540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : lsd one like 1 | ||||||||
| Curator Summary (TAIR10) |
Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death. | ||||||||
| Computational Description (TAIR10) |
lsd one like 1 (LOL1); FUNCTIONS IN: DNA binding; INVOLVED IN: induction of apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LSD1 zinc finger family protein (TAIR:AT4G20380.7); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11768253..11769591 | ||||||||
| Molecular Weight (calculated) | 20287.00 Da | ||||||||
| IEP (calculated) | 8.29 | ||||||||
| GRAVY (calculated) | 0.41 | ||||||||
| Length | 187 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP 101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)