AT4G35440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chloride channel E | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Enclodes a choride channel protein that is localized to the thlakoid membrane. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
chloride channel E (CLC-E); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel F (TAIR:AT1G55620.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16836384..16839345 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75560.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 710 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAATLPLCAA LRSPVSSRRF APIHKTDVPF QFNVVLSPFF GSVAIGGRIF PRLPAAKQET DQDEVGFDQQ PSQELAIASA CLVGVLTGVS VVLFNNCVHL 101: LRDFSWDGIP DRGASWLREA PIGSNWLRVI LVPTIGGLVV SILNQLRESA GKSTGDSHSS LDRVKAVLRP FLKTVAACVT LGTGNSLGPE GPSVEIGASI 201: AKGVNSLFNK SPQTGFSLLA AGSAAGISSG FNAAVAGCFF AVESVLWPSS STDSSTSLPN TTSMVILSAV TASVVSEIGL GSEPAFKVPD YDFRSPGELP 301: LYLLLGALCG LVSLALSRCT SSMTSAVDSL NKDAGIPKAV FPVMGGLSVG IIALVYPEVL YWGFQNVDIL LEKRPFVKGL SADLLLQLVA VKIAATAWCR 401: ASGLVGGYYA PSLFIGGAAG MAYGKFIGLA LAQNPDFNLS ILEVASPQAY GLVGMAATLA GVCQVPLTAV LLLFELTQDY RIVLPLLGAV GMSSWITSGQ 501: SKRQETRETK ETRKRKSQEA VQSLTSSDDE SSTNNLCEVE SSLCLDDSLN QSEELPKSIF VSEAMRTRFA TVMMSTSLEE ALTRMLIEKQ SCALIVDPDN 601: IFLGILTLSD IQEFSKARKE GNNRPKDIFV NDICSRSGGK CKVPWTVTPD MDLLAAQTIM NKHELSHVAV VSGSIDAPRI HPVGVLDREC ITLTRRALAT 701: RMYLLNSLYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)