AT1G60600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UbiA prenyltransferase family protein | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport. | ||||||||||||||||
| Computational Description (TAIR10) |
ABERRANT CHLOROPLAST DEVELOPMENT 4 (ABC4); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537), 1,4-dihydroxy-2-naphthoate phytyltransferase (InterPro:IPR011937); Has 2128 Blast hits to 2126 proteins in 766 species: Archae - 57; Bacteria - 1544; Metazoa - 40; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 438 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22324807..22326395 | ||||||||||||||||
| Molecular Weight (calculated) | 31056.60 Da | ||||||||||||||||
| IEP (calculated) | 9.15 | ||||||||||||||||
| GRAVY (calculated) | 0.71 | ||||||||||||||||
| Length | 287 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYSVALVPLT VGASAAYLET GLFLARRYVT LLLSSILIIT WLNLSNDVYD FDTGADKNKM ESVVNLVGSR TGTLAAAITS LALGVSGLVW TSLNASNIRA 101: ILLLASAILC GYVYQCPPFR LSYQGLGEPL CFAAFGPFAT TAFYLLLGSS SEMRHLPLSG RVLSSSVLVG FTTSLILFCS HFHQVDGDLA VGKYSPLVRL 201: GTEKGAFVVR WTIRLLYSML LVLGLTRILP LPCTLMCFLT LPVGNLVSSY VEKHHKDNGK IFMAKYYCVR LHALLGAALS LGLVIAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)