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AT5G27390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); Has 23 Blast hits to 23 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411019BeggNOG:KOG4599EMBL:CP002688EnsemblPlants:AT5G27390
EnsemblPlants:AT5G27390.1entrez:832798Gene3D:3.40.1000.10GeneID:832798
GO:GO:0005509GO:GO:0009507GO:GO:0009654GO:GO:0015979
GO:GO:0019898Gramene:AT5G27390.1hmmpanther:PTHR37764hmmpanther:PTHR37764:SF1
InParanoid:F4K4A6InterPro:IPR002683InterPro:IPR016123KEGG:ath:AT5G27390
OMA:EGFRTYYPaxDb:F4K4A6Pfam:PF01789PRIDE:F4K4A6
ProteinModelPortal:F4K4A6Proteomes:UP000006548RefSeq:NP_198091.2STRING:3702.AT5G27390.1
SUPFAM:SSF55724TAIR:AT5G27390UniGene:At.70201UniProt:F4K4A6
Coordinates (TAIR10) chr5:-:9674634..9676118
Molecular Weight (calculated) 26769.00 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.19
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MAILLHSLSL HPPNPKPQNP YKPKILSSSA TFRRDVVLRT ASLCFVSFIF QNQIPESLAD PLKSTKPLRL GIANTKSWFQ YFGSGFAIRV PPDFEDVNEP
101: EDYSAGLSLY GDKAKPQTFA ARFQTPDGSE VLSVVIRPSN QLKITFLEAK DISDLGSLKA AARLFVPGAA TIYSARTIKV KEEEGLRNYY FYEFGRDEER
201: IALVASVNRG KVYIAGAAAP ESKWKDDELK LRSAAISFTI L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)