AT5G10690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3374443..3377332 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64495.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.45 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 580 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRISAISTL VTPLPLLPSC SFVPTRRCYP RRATPYSRRI NLKPLTSRIV LLTRRRQLGQ IVEEVEAAKK RYGRLNTIVM NSVLEACVHC GNIDLALRMF 101: HEMAEPGGIG VDSISYATIL KGLGKARRID EAFQMLETIE YGTAAGTPKL SSSLIYGLLD ALINAGDLRR ANGLLARYDI LLLDHGTPSV LIYNLLMKGY 201: VNSESPQAAI NLLDEMLRLR LEPDRLTYNT LIHACIKCGD LDAAMKFFND MKEKAEEYYD DFLQPDVVTY TTLVKGFGDA TDLLSLQEIF LEMKLCENVF 301: IDRTAFTAVV DAMLKCGSTS GALCVFGEIL KRSGANEVLR PKPHLYLSMM RAFAVQGDYG MVRNLYLRLW PDSSGSISKA VQQEADNLLM EAALNDGQLD 401: EALGILLSIV RRWKTIPWTT SGGMAAVRLE TLLGFSKSIL RPHLLSKVIP SEPIESIMIR FEATRPLLGT LQLKNVAMRF FKEQVVPIVD DRGSCIGLLH 501: REDCNNLDAP LVSMMRSPPT CVSTTTSIGR VVDLVLEKKL KMVIVVHCGN FSGSGYSSKA VGAFTRAQLY RLFESEQKLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)