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AT4G27600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pfkB-like carbohydrate kinase family protein
Curator
Summary (TAIR10)
Encodes a phosphofructokinase B-type carbohydrate kinase family protein, NARA5. Regulates photosynthetic gene expression.
Computational
Description (TAIR10)
GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5 (NARA5); CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G19600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0524eggNOG:KOG2854EMBL:AY052355EMBL:AY059658
EMBL:CP002687EnsemblPlants:AT4G27600EnsemblPlants:AT4G27600.1entrez:828871
Gene3D:3.40.1190.20GeneID:828871GO:GO:0009507GO:GO:0015979
GO:GO:0016301GO:GO:0016773Gramene:AT4G27600.1gramene_pathway:2.7.1.20
gramene_pathway:PWY-6619hmmpanther:PTHR10584hmmpanther:PTHR10584:SF162IntAct:Q940Y6
InterPro:IPR002173InterPro:IPR011611InterPro:IPR029056KEGG:ath:AT4G27600
OMA:RTMCTYLPfam:PF00294PhylomeDB:Q940Y6PROSITE:PS00584
Proteomes:UP000006548RefSeq:NP_567780.1scanprosite:PS00584SMR:Q940Y6
STRING:3702.AT4G27600.1SUPFAM:SSF53613TAIR:AT4G27600tair10-symbols:NARA5
UniGene:At.2798UniProt:Q940Y6
Coordinates (TAIR10) chr4:-:13782753..13785005
Molecular Weight (calculated) 50035.10 Da
IEP (calculated) 4.87
GRAVY (calculated) -0.01
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSLLSPIP TSASLFFTLS AITASNNASS SSLSRLYSLY HPKGTLRTRT ATSFFGASGN LRIVSMAENR QLVCRIGGGA GAELDDMDEG EIQRIGNEDE
101: DDDEFIQVHA NNSSAASPER WDVLGLGQAM VDFSGVVDDE FLKKLGLEKG TRKLINHEER GKLLQAMDGC SYKAAAGGSL SNTLVALARL GSQSICDRPL
201: NVAMAGSIGG DPLGSFYGTK LRRANVNFLS APIKDGTTGT VIVLTTPDAQ RTMLAYQGTS SVVNYDSCLA SLIAKTNVFV VEGYLFELPD TIRTITKACE
301: EAHRNGALVA VTASDVSCIE RHYDDFWDIV GNYADIVFAN SDEARAFCHF SAEESPISAT RYMSHFVPFV SVTDGINGSY IGVKGEAIYI PPSPCVPVDT
401: CGAGDAYASG ILYGILRGVS DLKGMGDMAA TIAATVVGQQ GTRLRVQDAV ELARSHAFRL NGSGVRTDVG S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)