AT5G28500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:10477810..10479114 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48239.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.71 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSLTATTLS SSIFTQSKTH GFFNTRPVYR KPFTTITSAL IPASNRQAPP KQQLYQPFRP PPSPIPPKFR SLDTAGKIEV LADRLGLWFE YAPLISSLYT 101: EGFTPPSIEE LTGISGVEQN SLIVGAQVRD SLVQSGAKPE LIAAFDTNGA ELLYEIRLLN TTQRVAAAEY IVDHGFDTKG AGDLARAIKD FPHRRGDVGL 201: GDFDYNLPGD CLSFMLYRKS REHRSPSEIR TTLLEQALET AVTEKAKKAV LRELHGESEE ERVKEEEIKI IRVPVVRLRF GEVAGASSVV VLPVCKAEEG 301: EEKLLEAPME FESGGEFGVV EAEKDWSRWV VLPGWDPVVA VRKGVAVSFS DDREVLPWNG KGEAIMVVID REKKTVEADN GYYYLVVADG GMKLDRGLVL 401: KEKGVNESLG MVVLVVRPPR DDDDEWQIND EDWD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)