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AT1G68590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein PSRP-3/Ycf65
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein PSRP-3/Ycf65; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein PSRP-3/Ycf65 (InterPro:IPR006924); BEST Arabidopsis thaliana protein match is: Ribosomal protein PSRP-3/Ycf65 (TAIR:AT5G15760.1); Has 390 Blast hits to 390 proteins in 107 species: Archae - 0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
Protein Annotations
BioGrid:28410eggNOG:ENOG410IYWDeggNOG:ENOG4111VGAEMBL:AC008075
EMBL:AY086145EMBL:BT003990EMBL:BT005090EMBL:CP002684
EnsemblPlants:AT1G68590EnsemblPlants:AT1G68590.1entrez:843189ExpressionAtlas:Q9SX22
GeneID:843189Genevisible:Q9SX22GO:GO:0003735GO:GO:0005840
GO:GO:0009507GO:GO:0009535GO:GO:0009570GO:GO:0009579
GO:GO:0032544hmmpanther:PTHR35108hmmpanther:PTHR35108:SF1HOGENOM:HOG000240847
InParanoid:Q9SX22IntAct:Q9SX22InterPro:IPR006924OMA:GIDTSDN
PaxDb:Q9SX22Pfam:PF04839Pfam:Q9SX22PhylomeDB:Q9SX22
PIR:C96710PRIDE:Q9SX22PRO:PR:Q9SX22ProDom:PD015453
ProteinModelPortal:Q9SX22Proteomes:UP000006548RefSeq:NP_564934.1SMR:Q9SX22
STRING:3702.AT1G68590.1TAIR:AT1G68590UniGene:At.35504UniGene:At.71121
UniProt:Q9SX22
Coordinates (TAIR10) chr1:-:25757593..25758169
Molecular Weight (calculated) 18473.40 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.21
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSSMALSST SLCSSFISQH PKLSITASPP LFHTQTTKPI SVKRKIITLA APETLTAETV TGIDTSDNTP QQTIKVVKPD EKSRVVLKFV WMEKNIGLGL
101: DQHVPGHGTI PLSPYFFWPR KDAWEELKST LEAKPWISQK KMIILLNQAT DIINLWQQSG GNLTSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)