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AT4G18480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. All four cysteine residues of the protein form two disulfide bonds (Cys102-Cys193 and Cys354-Cys396) under oxidized conditions but are fully reduced by reduction. It was suggested that the redox state of CHLI is regulated in vivo by the change of the redox environment in the chloroplasts probably via the Trx system.
Computational
Description (TAIR10)
CHLI1; FUNCTIONS IN: magnesium chelatase activity, ATPase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: magnesium chelatase complex, cell wall, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Magnesium chelatase, ChlI subunit (InterPro:IPR000523), Magnesium chelatase, ATPase subunit I (InterPro:IPR011775); BEST Arabidopsis thaliana protein match is: magnesium chelatase i2 (TAIR:AT5G45930.1); Has 6584 Blast hits to 6581 proteins in 1594 species: Archae - 309; Bacteria - 5009; Metazoa - 2; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 1058 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G18480-MONOMERBioCyc:MetaCyc:MONOMER1F-75BioGrid:12873EC:6.6.1.1
eggNOG:COG1239eggNOG:ENOG410IESJEMBL:AK227146EMBL:AL021710
EMBL:AL161548EMBL:AY093192EMBL:BT010129EMBL:CP002687
EMBL:X51799EMBL:X91411EnsemblPlants:AT4G18480EnsemblPlants:AT4G18480.1
entrez:827580Gene3D:3.40.50.300GeneID:827580Genevisible:P16127
GO:GO:0005524GO:GO:0005618GO:GO:0009507GO:GO:0009570
GO:GO:0009735GO:GO:0010007GO:GO:0015979GO:GO:0015995
GO:GO:0016851GO:GO:0016887Gramene:AT4G18480.1hmmpanther:PTHR32039
hmmpanther:PTHR32039:SF9HOGENOM:HOG000225091InParanoid:P16127IntAct:P16127
InterPro:IPR000523InterPro:IPR003593InterPro:IPR011775InterPro:IPR027417
iPTMnet:P16127KEGG:00860+6.6.1.1KEGG:ath:AT4G18480KO:K03405
ncoils:CoilOMA:IVAQEEMPaxDb:P16127Pfam:P16127
Pfam:PF01078PhylomeDB:P16127PIR:S12785PRIDE:P16127
PRO:PR:P16127ProteinModelPortal:P16127Proteomes:UP000006548RefSeq:NP_193583.1
SMART:SM00382SMR:P16127STRING:3702.AT4G18480.1SUPFAM:SSF52540
SWISS-2DPAGE:P16127TAIR:AT4G18480tair10-symbols:CH-42tair10-symbols:CH42
tair10-symbols:CHL11tair10-symbols:CHLI-1tair10-symbols:CHLI1TIGRfam:TIGR02030
TIGRFAMs:TIGR02030UniGene:At.27665UniPathway:UPA00668UniProt:P16127
Coordinates (TAIR10) chr4:-:10201897..10203361
Molecular Weight (calculated) 46272.60 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.22
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLGTSSS AIWASPSLSS PSSKPSSSPI CFRPGKLFGS KLNAGIQIRP KKNRSRYHVS VMNVATEINS TEQVVGKFDS KKSARPVYPF AAIVGQDEMK
101: LCLLLNVIDP KIGGVMIMGD RGTGKSTTVR SLVDLLPEIN VVAGDPYNSD PIDPEFMGVE VRERVEKGEQ VPVIATKINM VDLPLGATED RVCGTIDIEK
201: ALTEGVKAFE PGLLAKANRG ILYVDEVNLL DDHLVDVLLD SAASGWNTVE REGISISHPA RFILIGSGNP EEGELRPQLL DRFGMHAQVG TVRDADLRVK
301: IVEERARFDS NPKDFRDTYK TEQDKLQDQI STARANLSSV QIDRELKVKI SRVCSELNVD GLRGDIVTNR AAKALAALKG KDRVTPDDVA TVIPNCLRHR
401: LRKDPLESID SGVLVSEKFA EIFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)