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AT3G48730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:30309965 (2018): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25740923 (2015): plastid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamate-1-semialdehyde 2,1-aminomutase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glutamate-1-semialdehyde 2,1-aminomutase 2 (GSA2); FUNCTIONS IN: glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase (InterPro:IPR004639), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate-1-semialdehyde-2,1-aminomutase (TAIR:AT5G63570.1); Has 34778 Blast hits to 34772 proteins in 2825 species: Archae - 734; Bacteria - 23568; Metazoa - 533; Fungi - 800; Plants - 388; Viruses - 10; Other Eukaryotes - 8745 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48730-MONOMERBioGrid:9352EC:5.4.3.8eggNOG:COG0001
eggNOG:ENOG410IPFVEMBL:AK229328EMBL:AL133315EMBL:BT025324
EMBL:CP002686EMBL:U10278EnsemblPlants:AT3G48730EnsemblPlants:AT3G48730.1
entrez:824034Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:824034
Genevisible:Q42522GO:GO:0006782GO:GO:0008483GO:GO:0009507
GO:GO:0009570GO:GO:0009941GO:GO:0015995GO:GO:0030170
GO:GO:0042286GO:GO:0042802Gramene:AT3G48730.1gramene_pathway:5.4.3.8
gramene_pathway:PWY-5188gramene_plant_reactome:4827054gramene_plant_reactome:6877139HAMAP:MF_00375
hmmpanther:PTHR11986hmmpanther:PTHR11986:SF84HOGENOM:HOG000020210InParanoid:Q42522
InterPro:IPR004639InterPro:IPR005814InterPro:IPR015421InterPro:IPR015422
InterPro:IPR015424KEGG:00860+5.4.3.8KEGG:ath:AT3G48730KO:K01845
MINT:MINT-8069640OMA:QATAHARPANTHER:PTHR11986PaxDb:Q42522
Pfam:PF00202Pfam:Q42522PhylomeDB:Q42522PIR:T46217
PRIDE:Q42522PRO:PR:Q42522PROSITE:PS00600ProteinModelPortal:Q42522
Proteomes:UP000006548RefSeq:NP_190442.1scanprosite:PS00600SMR:Q42522
STRING:3702.AT3G48730.1SUPFAM:SSF53383TAIR:AT3G48730tair10-symbols:GSA2
TIGRfam:TIGR00713TIGRFAMs:TIGR00713UniGene:At.19963UniPathway:UPA00251
UniPathway:UPA00668UniProt:Q42522
Coordinates (TAIR10) chr3:+:18049697..18051550
Molecular Weight (calculated) 50144.40 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.00
Length 472 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATLTGSGI ALGFSCSAKF SKRASSSSNR RCIKMSVSVE EKTKKFTLQK SEEAFNAAKN LMPGGVNSPV RAFKSVGGQP VVMDSAKGSR IRDIDGNEYI
101: DYVGSWGPAI IGHADDEVLA ALAETMKKGT SFGAPCLLEN VLAEMVISAV PSIEMVRFVN SGTEACMGVL RLARAFTGKQ KFIKFEGCYH GHANSFLVKA
201: GSGVATLGLP DSPGVPKAAT SDTLTAPYND IAAVEKLFEA NKGEIAAIIL EPVVGNSGFI TPKPEFIEGI RRITKDNGAL LIFDEVMTGF RLAYGGAQEY
301: FGITPDLTTL GKIIGGGLPV GAYGGRRDIM EMVAPAGPMY QAGTLSGNPL AMTAGIHTLK RLSQPGTYEY LDKITKELTN GILEAGKKTG HAMCGGYISG
401: MFGFFFTEGP VYDFSDAKKS DTEKFGKFFR GMLEEGVYLA PSQFEAGFTS LAHTSEDIQF TIAAAEKVLS RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)