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AT3G62120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Class II aaRS and biotin synthetases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449), Prolyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR002316), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT5G52520.1); Has 9240 Blast hits to 8990 proteins in 2633 species: Archae - 270; Bacteria - 6522; Metazoa - 295; Fungi - 194; Plants - 105; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G62120-MONOMERBioCyc:ARA:GQT-2558-MONOMEREC:6.1.1.15eggNOG:COG0442
eggNOG:KOG4163EMBL:AL138651EMBL:AY059812EMBL:AY128720
EMBL:CP002686EnsemblPlants:AT3G62120EnsemblPlants:AT3G62120.1EnsemblPlants:AT3G62120.2
entrez:825385Gene3D:3.30.110.30Gene3D:3.40.50.800GeneID:825385
Genevisible:Q9M1R2GO:GO:0004827GO:GO:0005524GO:GO:0005829
GO:GO:0006433GO:GO:0009506GO:GO:0016020Gramene:AT3G62120.1
Gramene:AT3G62120.2HAMAP:MF_01571hmmpanther:PTHR11451hmmpanther:PTHR11451:SF21
HOGENOM:HOG000167538InParanoid:Q9M1R2IntAct:Q9M1R2InterPro:IPR002314
InterPro:IPR002316InterPro:IPR004154InterPro:IPR004499InterPro:IPR006195
InterPro:IPR016061InterPro:IPR017449KEGG:ath:AT3G62120KO:K01881
ncoils:CoilOMA:CESTVYTPaxDb:Q9M1R2Pfam:PF00587
Pfam:PF03129Pfam:PF09180Pfscan:PS50862PhylomeDB:Q9M1R2
PIR:T48004PRIDE:Q9M1R2PRINTS:PR01046PRO:PR:Q9M1R2
PROSITE:PS50862ProteinModelPortal:Q9M1R2Proteomes:UP000006548RefSeq:NP_191771.1
RefSeq:NP_850736.1SMART:SM00946SMR:Q9M1R2STRING:3702.AT3G62120.1
SUPFAM:SSF52954SUPFAM:SSF55681SUPFAM:SSF64586TAIR:AT3G62120
TIGRfam:TIGR00408TIGRFAMs:TIGR00408UniGene:At.23933UniProt:Q9M1R2
Coordinates (TAIR10) chr3:-:23001227..23003849
Molecular Weight (calculated) 60758.60 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.56
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)