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AT5G26710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:15157177 (2004): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Glutamyl/glutaminyl-tRNA synthetase, class Ic
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glutamyl/glutaminyl-tRNA synthetase, class Ic; FUNCTIONS IN: glutamate-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolic (InterPro:IPR004526), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (TAIR:AT1G25350.1); Has 14411 Blast hits to 14402 proteins in 2977 species: Archae - 262; Bacteria - 9488; Metazoa - 657; Fungi - 449; Plants - 238; Viruses - 0; Other Eukaryotes - 3317 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G26710-MONOMERBRENDA:6.1.1.17DIP:DIP-48341NEC:6.1.1.17
eggNOG:COG0008eggNOG:KOG1147EMBL:AF058914EMBL:AF067773
EMBL:AK226448EMBL:AY099592EMBL:BT000248EMBL:CP002688
EnsemblPlants:AT5G26710EnsemblPlants:AT5G26710.1entrez:832718Gene3D:1.10.1160.10
Gene3D:1.20.1050.10Gene3D:2.40.240.10Gene3D:3.40.50.620GeneID:832718
Genevisible:O82462GO:GO:0004818GO:GO:0005524GO:GO:0005829
GO:GO:0006424Gramene:AT5G26710.1gramene_pathway:6.1.1.17gramene_pathway:PWY-5188
gramene_pathway:TRNA-CHARGING-PWYhmmpanther:PTHR11451hmmpanther:PTHR11451:SF37HOGENOM:HOG000259234
InParanoid:O82462InterPro:IPR000924InterPro:IPR001412InterPro:IPR004046
InterPro:IPR004526InterPro:IPR010987InterPro:IPR011035InterPro:IPR014729
InterPro:IPR020056InterPro:IPR020058InterPro:IPR020059InterPro:IPR020061
iPTMnet:O82462KEGG:00860+6.1.1.17KEGG:00970+6.1.1.17KEGG:ath:AT5G26710
KO:K01885OMA:TEYRTNAPaxDb:O82462Pfam:PF00749
Pfam:PF03950Pfam:PF14497PhylomeDB:O82462PIR:T01200
PIR:T52043PRIDE:O82462PRINTS:PR00987PRO:PR:O82462
PROSITE:PS00178ProteinModelPortal:O82462Proteomes:UP000006548RefSeq:NP_850874.1
scanprosite:PS00178SMR:O82462STRING:3702.AT5G26710.1SUPFAM:SSF47616
SUPFAM:SSF50715SUPFAM:SSF52374TAIR:AT5G26710TIGRfam:TIGR00463
TIGRFAMs:TIGR00463UniGene:At.49067UniGene:At.71213UniProt:O82462
Coordinates (TAIR10) chr5:+:9305673..9308247
Molecular Weight (calculated) 81068.90 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.40
Length 719 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGMKLSFPP ESPPLSVIVA LSLSASPVTI DSSAAATTVP SFVFSDGRKL NGATVLLRYV GRSAKKLPDF YGNNAFDSSQ IDEWVDYASV FSSGSEFENA
101: CGRVDKYLES STFLVGHSLS IADVAIWSAL AGTGQRWESL RKSKKYQSLV RWFNSILDEY SEVLNKVLAT YVKKGSGKPV AAPKSKDSQQ AVKGDGQDKG
201: KPEVDLPEAE IGKVKLRFAP EPSGYLHIGH AKAALLNKYF AERYQGEVIV RFDDTNPAKE SNEFVDNLVK DIGTLGIKYE KVTYTSDYFP ELMDMAEKLM
301: REGKAYVDDT PREQMQKERM DGIDSKCRNH SVEENLKLWK EMIAGSERGL QCCVRGKFNM QDPNKAMRDP VYYRCNPMSH HRIGDKYKIY PTYDFACPFV
401: DSLEGITHAL RSSEYHDRNA QYFKVLEDMG LRQVQLYEFS RLNLVFTLLS KRKLLWFVQT GLVDGWDDPR FPTVQGIVRR GLKIEALIQF ILEQGASKNL
501: NLMEWDKLWS INKRIIDPVC PRHTAVVAER RVLFTLTDGP DEPFVRMIPK HKKFEGAGEK ATTFTKSIWL EEADASAISV GEEVTLMDWG NAIVKEITKD
601: EEGRVTALSG VLNLQGSVKT TKLKLTWLPD TNELVNLTLT EFDYLITKKK LEDDDEVADF VNPNTKKETL ALGDSNMRNL KCGDVIQLER KGYFRCDVPF
701: VKSSKPIVLF SIPDGRAAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)