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AT5G24930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CONSTANS-like 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONSTANS-like 4 (COL4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 3 (TAIR:AT2G24790.1); Has 3148 Blast hits to 2480 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 2958; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Protein Annotations
BioGrid:17838DIP:DIP-48343NeggNOG:COG5641eggNOG:KOG1601
EMBL:AF069716EMBL:AY052697EMBL:AY143826EMBL:CP002688
EnsemblPlants:AT5G24930EnsemblPlants:AT5G24930.1entrez:832563ExpressionAtlas:Q940T9
GeneID:832563Genevisible:Q940T9GO:GO:0005634GO:GO:0008270
Gramene:AT5G24930.1hmmpanther:PTHR31319hmmpanther:PTHR31319:SF4HOGENOM:HOG000238833
InParanoid:Q940T9IntAct:Q940T9InterPro:IPR000315InterPro:IPR010402
KEGG:ath:AT5G24930PaxDb:Q940T9Pfam:PF00643Pfam:PF06203
Pfam:Q940T9Pfscan:PS50119Pfscan:PS51017PhylomeDB:Q940T9
PRIDE:Q940T9PRO:PR:Q940T9PROSITE:PS50119PROSITE:PS51017
ProteinModelPortal:Q940T9Proteomes:UP000006548RefSeq:NP_197875.2SMART:SM00336
STRING:3702.AT5G24930.1TAIR:AT5G24930tair10-symbols:ATCOL4tair10-symbols:COL4
UniGene:At.21472UniGene:At.30494UniGene:At.3220UniProt:C0SVQ4
UniProt:Q940T9
Coordinates (TAIR10) chr5:+:8589325..8590949
Molecular Weight (calculated) 44677.10 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.64
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPTWIDSLT RSCEANSNTN HKRKRERETL KHREKKKKRF RERKMASKLC DSCKSATAAL YCRPDAAFLC LSCDSKVHAA NKLASRHARV WMCEVCEQAP
101: AHVTCKADAA ALCVTCDRDI HSANPLARRH ERVPVTPFYD SVSSDGSVKH TAVNFLDDCY FSDIDGNGSR EEEEEEAASW LLLPNPKTTT TATAGIVAVT
201: SAEEVPGDSP EMNTGQQYLF SDPDPYLDLD YGNVDPKVES LEQNSSGTDG VVPVENRTVR IPTVNENCFE MDFTGGSKGF TYGGGYNCIS HSVSSSSMEV
301: GVVPDGGSVA DVSYPYGGPA TSGADPGTQR AVPLTSAERE ARVMRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDTNESNDV VGHGGIFSGF
401: GLVPTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)