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AT3G17040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24124904 (2013): plastid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high chlorophyll fluorescent 107
Curator
Summary (TAIR10)
It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.
Computational
Description (TAIR10)
high chlorophyll fluorescent 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, RNA processing, regulation of translation; LOCATED IN: chloroplast, plasma membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1); Has 8355 Blast hits to 4834 proteins in 935 species: Archae - 387; Bacteria - 2714; Metazoa - 1907; Fungi - 1281; Plants - 751; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0457eggNOG:KOG1124EMBL:AB026636EMBL:AY093112
EMBL:BT008405EMBL:CP002686EnsemblPlants:AT3G17040EnsemblPlants:AT3G17040.1
entrez:820961ExpressionAtlas:Q8RWG2Gene3D:1.25.40.10GeneID:820961
Genevisible:Q8RWG2GO:GO:0003727GO:GO:0005774GO:GO:0006396
GO:GO:0006397GO:GO:0006417GO:GO:0009507GO:GO:0009570
GO:GO:0009657GO:GO:0009941GO:GO:0010114GO:GO:0031969
GO:GO:0043621GO:GO:1901918hmmpanther:PTHR11246hmmpanther:PTHR11246:SF11
HOGENOM:HOG000240001InParanoid:Q8RWG2InterPro:IPR003107InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734iPTMnet:Q8RWG2OMA:RYEQARY
PaxDb:Q8RWG2Pfam:PF07719Pfam:PF13428Pfscan:PS50005
Pfscan:PS50293PhylomeDB:Q8RWG2PRIDE:Q8RWG2PRO:PR:Q8RWG2
PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:Q8RWG2Proteomes:UP000006548
RefSeq:NP_188329.1SMART:SM00028SMART:SM00386SMR:Q8RWG2
STRING:3702.AT3G17040.1SUPFAM:SSF48452TAIR:AT3G17040tair10-symbols:HCF107
UniGene:At.22706UniProt:Q8RWG2
Coordinates (TAIR10) chr3:-:5809378..5812605
Molecular Weight (calculated) 73474.60 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.56
Length 652 amino acids
Sequence (TAIR10)
(BLAST)
001: MHFFFVPNSS SSSPSPANTS SFSLSFLTPQ IPENLCKSPT KIHIGTHGIS GQSFLSHPTF SSKNTYLYAV VDRSSSGVFS PQKESANGEG EESNTEEGVL
101: VVRRPLLENS DKESSEEEGK KYPARIDAGL SNIAKKMPIF EPERSESSSS SSAAAAARAQ ERPLAVNLDL SLYKAKVLAR NFRYKDAEKI LEKCIAYWPE
201: DGRPYVALGK ILSKQSKLAE ARILYEKGCQ STQGENSYIW QCWAVLENRL GNVRRARELF DAATVADKKH VAAWHGWANL EIKQGNISKA RNLLAKGLKF
301: CGRNEYIYQT LALLEAKAGR YEQARYLFKQ ATICNSRSCA SWLAWAQLEI QQERYPAARK LFEKAVQASP KNRFAWHVWG VFEAGVGNVE RGRKLLKIGH
401: ALNPRDPVLL QSLGLLEYKH SSANLARALL RRASELDPRH QPVWIAWGWM EWKEGNTTTA RELYQRALSI DANTESASRC LQAWGVLEQR AGNLSAARRL
501: FRSSLNINSQ SYVTWMTWAQ LEEDQGDTER AEEIRNLYFQ QRTEVVDDAS WVTGFLDIID PALDTVKRLL NFGQNNDNNR LTTTLRNMNR TKDSQSNQQP
601: ESSAGREDIE TGSGFNLDVF LRSKLSLDPL KLDVNLDSKR LERFTRGRIN GA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)