suba logo
AT3G59400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:24124904 (2013): plastid
  • PMID:20423899 (2010): plastid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : enzyme binding;tetrapyrrole binding
Curator
Summary (TAIR10)
GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.
Computational
Description (TAIR10)
GENOMES UNCOUPLED 4 (GUN4); FUNCTIONS IN: tetrapyrrole binding, enzyme binding; INVOLVED IN: chlorophyll biosynthetic process, chloroplast-nucleus signaling pathway, positive regulation of catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GUN4-like (InterPro:IPR008629); Has 685 Blast hits to 680 proteins in 101 species: Archae - 0; Bacteria - 474; Metazoa - 4; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWEAeggNOG:ENOG410XQHGEMBL:AL356014EMBL:AY063918
EMBL:AY150510EMBL:CP002686EnsemblPlants:AT3G59400EnsemblPlants:AT3G59400.1
entrez:825109GeneID:825109Genevisible:Q9LX31GO:GO:0009507
GO:GO:0010019GO:GO:0015995GO:GO:0019899GO:GO:0031969
GO:GO:0043085GO:GO:0046906Gramene:AT3G59400.1hmmpanther:PTHR34800
hmmpanther:PTHR34800:SF1HOGENOM:HOG000243757InParanoid:Q9LX31InterPro:IPR008629
iPTMnet:Q9LX31KEGG:ath:AT3G59400OMA:KSIFTHPPaxDb:Q9LX31
Pfam:PF05419Pfam:Q9LX31PhylomeDB:Q9LX31PIR:T49008
PRIDE:Q9LX31PRO:PR:Q9LX31ProteinModelPortal:Q9LX31Proteomes:UP000006548
RefSeq:NP_191499.1SMR:Q9LX31STRING:3702.AT3G59400.1SUPFAM:SSF140869
TAIR:AT3G59400tair10-symbols:GUN4UniGene:At.1522UniProt:Q9LX31
Coordinates (TAIR10) chr3:-:21948881..21949678
Molecular Weight (calculated) 29666.60 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.43
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTNSLHHH HHSSPSYTHH RNNLHCQSHF GPTSLSLKQP TSAATFSLIC SASSTSSSTT AVSAVSTTNA SATTAETATI FDVLENHLVN QNFRQADEET
101: RRLLIQISGE AAVKRGYVFF SEVKTISPED LQAIDNLWIK HSDGRFGYSV QRKIWLKVKK DFTRFFVKVE WMKLLDTEVV QYNYRAFPDE FKWELNDETP
201: LGHLPLTNAL RGTQLLKCVL SHPAFATADD NSGETEDELN RGVAVAKEQA GVGADKRVFK TNYSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)