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AT1G51400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Photosystem II 5 kD protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Photosystem II 5 kD protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B, response to wounding, response to ozone; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast photosystem II; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem II subunit T (TAIR:AT3G21055.1); Has 88 Blast hits to 88 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3D8eggNOG:ENOG410Z5TBEMBL:AC006085EMBL:AC024261
EMBL:AF385721EMBL:AY050320EMBL:AY133673EMBL:CP002684
EnsemblPlants:AT1G51400EnsemblPlants:AT1G51400.1entrez:841564GeneID:841564
GO:GO:0009535GO:GO:0009611GO:GO:0010193GO:GO:0010224
Gramene:AT1G51400.1hmmpanther:PTHR34940hmmpanther:PTHR34940:SF1KEGG:ath:AT1G51400
OMA:MKMRRDLPhylomeDB:Q9SYE2PIR:B96552Proteomes:UP000006548
RefSeq:NP_564589.1STRING:3702.AT1G51400.1TAIR:AT1G51400UniGene:At.11631
UniGene:At.66913UniGene:At.68288UniProt:Q9SYE2
Coordinates (TAIR10) chr1:-:19052172..19052492
Molecular Weight (calculated) 11361.80 Da
IEP (calculated) 10.49
GRAVY (calculated) -0.29
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMTMTSSF LPTVSNLPAN ISSNSRRSLT VVKASGSENT TSLENKKQEQ SMKMRRDLVF TAAAAAVCSL AKVAMADDEP KRGTEAAKKK YAPVCVTMPT
101: AKICRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)