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AT3G21055.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II subunit T
Curator
Summary (TAIR10)
Encodes photosystem II 5 kD protein subunit PSII-T. This is a nuclear-encoded gene (PsbTn) which also has a plastid-encoded paralog (PsbTc).
Computational
Description (TAIR10)
photosystem II subunit T (PSBTN); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast photosystem II, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Photosystem II 5 kD protein (TAIR:AT1G51400.1); Has 88 Blast hits to 88 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6989eggNOG:ENOG410J3D8eggNOG:ENOG410Z5TBEMBL:AF324686
EMBL:AF326859EMBL:AF339682EMBL:AP000604EMBL:AY062605
EMBL:AY087758EMBL:AY093364EMBL:CP002686EMBL:X98078
EMBL:Z17733EnsemblPlants:AT3G21055EnsemblPlants:AT3G21055.1entrez:821657
GeneID:821657Genevisible:Q39195GO:GO:0009523GO:GO:0009535
GO:GO:0015979Gramene:AT3G21055.1gramene_pathway:1.10.3.2gramene_pathway:PWY-101
hmmpanther:PTHR34940hmmpanther:PTHR34940:SF1HOGENOM:HOG000071084InParanoid:Q39195
KEGG:ath:AT3G21055OMA:TASICRNPaxDb:Q39195Pfam:Q39195
PhylomeDB:Q39195PRIDE:Q39195PRO:PR:Q39195Proteomes:UP000006548
RefSeq:NP_566674.1STRING:3702.AT3G21055.1TAIR:AT3G21055tair10-symbols:PSBTN
UniGene:At.25529UniProt:Q39195
Coordinates (TAIR10) chr3:-:7376761..7377072
Molecular Weight (calculated) 11028.40 Da
IEP (calculated) 10.03
GRAVY (calculated) -0.13
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMTMTATF FPAVAKVPSA TGGRRLSVVR ASTSDNTPSL EVKEQSSTTM RRDLMFTAAA AAVCSLAKVA MAEEEEPKRG TEAAKKKYAQ VCVTMPTAKI
101: CRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)