suba logo
AT5G13770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT5G42310.1); Has 28118 Blast hits to 10756 proteins in 260 species: Archae - 2; Bacteria - 14; Metazoa - 159; Fungi - 283; Plants - 26809; Viruses - 0; Other Eukaryotes - 851 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB011484EMBL:BT015358
EMBL:BT015886EMBL:CP002688EnsemblPlants:AT5G13770EnsemblPlants:AT5G13770.1
entrez:831222Gene3D:1.25.40.10GeneID:831222Genevisible:Q66GP4
GO:GO:0009507GO:GO:0009658Gramene:AT5G13770.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF785HOGENOM:HOG000240972InParanoid:Q66GP4InterPro:IPR002885
InterPro:IPR011990iPTMnet:Q66GP4KEGG:ath:AT5G13770OMA:CVELYQE
PaxDb:Q66GP4Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:Q66GP4Pfscan:PS51375PhylomeDB:Q66GP4PRIDE:Q66GP4
PRO:PR:Q66GP4PROSITE:PS51375ProteinModelPortal:Q66GP4Proteomes:UP000006548
RefSeq:NP_196881.2SMR:Q66GP4STRING:3702.AT5G13770.1SUPFAM:SSF81901
TAIR:AT5G13770TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.71038
UniGene:At.9249UniProt:Q66GP4
Coordinates (TAIR10) chr5:+:4445461..4447290
Molecular Weight (calculated) 69513.20 Da
IEP (calculated) 9.17
GRAVY (calculated) -0.37
Length 609 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIASGSWVA TVNHHANPHS FTSPTKPIFF LSQKPHNFHV CSSRCSMVLE EDEKKSPSPK EDKWPFFEPG PNDLNRVLSR FLRDPETRKL SSEFYEKAKE
101: NSELRTTKHL ISYLVSSKSW DLLVSVCEDL REHKALPDGQ TCSNLIRSCI RDRKFRITHC LLSVFRSDKS LAVSASDAAM KGFNKLQMYS STIQVFDRLK
201: QSVGVEPSPG CYCRIMEAHE KIGENHKVVE LFQEFKSQRL SFLAKESGSI YTIVCSSLAK SGRAFEALEV LEEMKDKGIP ESSELYSMLI RAFAEAREVV
301: ITEKLFKEAG GKKLLKDPEM CLKVVLMYVR EGNMETTLEV VAAMRKAELK VTDCILCAIV NGFSKQRGFA EAVKVYEWAM KEECEAGQVT YAIAINAYCR
401: LEKYNKAEML FDEMVKKGFD KCVVAYSNIM DMYGKTRRLS DAVRLMAKMK QRGCKPNIWI YNSLIDMHGR AMDLRRAEKI WKEMKRAKVL PDKVSYTSMI
501: SAYNRSKELE RCVELYQEFR MNRGKIDRAM AGIMVGVFSK TSRIDELMRL LQDMKVEGTR LDARLYSSAL NALRDAGLNS QIRWLQESFD AAQTSTSKYS
601: NTKNTGTLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)