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AT2G33250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27137770 (2016): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04310.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC002332EMBL:AC002334EMBL:AY045597EMBL:AY097386
EMBL:CP002685EnsemblPlants:AT2G33250EnsemblPlants:AT2G33250.1entrez:817887
GeneID:817887GO:GO:0016021Gramene:AT2G33250.1hmmpanther:PTHR35719
hmmpanther:PTHR35719:SF2HOGENOM:HOG000114071KEGG:ath:AT2G33250OMA:WEELFED
PIR:B84743Proteomes:UP000006548RefSeq:NP_565762.1STRING:3702.AT2G33250.1
TAIR:AT2G33250TMHMM:TMhelixUniGene:At.12111UniProt:O22777
Coordinates (TAIR10) chr2:+:14097454..14098678
Molecular Weight (calculated) 34004.60 Da
IEP (calculated) 10.14
GRAVY (calculated) -0.46
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MADRGALSLP RASTYLSFSN LHVWRFHNPR SYPPSRSQLL CFSSSCSRVT SAKIIQLNRR RFSYKICAAA DDGRGYRLTE RGKRGRKRRE LWEELFEDNV
101: EDDDDEDDGG GGIGSANFDL WKILEEIVDN VWILKAFKSY GYLLPFIILS LFFSTGPKAF LVSLAVAIGP SLLFYAFQKL IGWDKRRGTS IANQFGIEEE
201: EEEVERSSSR IRYNPSTVRN NVNGRGVNRS SAGMASKFGG WDELDGLGTT IPERPTSEPK KKPLPKRKRV RREKAAEPLL LRLLVSLFPF LSTYTNMLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)