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AT4G30500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.460
endoplasmic reticulum 0.370
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF788)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF788); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF788 (InterPro:IPR008506); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF788) (TAIR:AT2G23940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111RF3eggNOG:KOG3269EMBL:AY085506EMBL:BT025766
EMBL:CP002687EnsemblPlants:AT4G30500EnsemblPlants:AT4G30500.1entrez:829173
GeneID:829173GO:GO:0016021Gramene:AT4G30500.1hmmpanther:PTHR13505
hmmpanther:PTHR13505:SF7HOGENOM:HOG000230738InterPro:IPR008506KEGG:ath:AT4G30500
OMA:SHSSHTWPANTHER:PTHR13505Pfam:PF05620PhylomeDB:Q8LEC2
Proteomes:UP000006548RefSeq:NP_567848.1STRING:3702.AT4G30500.1TAIR:AT4G30500
TMHMM:TMhelixUniGene:At.31831UniProt:Q8LEC2
Coordinates (TAIR10) chr4:+:14903558..14904764
Molecular Weight (calculated) 19305.90 Da
IEP (calculated) 10.32
GRAVY (calculated) -0.10
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MANQGAKKRK DENARHMAKL RLIMILCNIL YVLVRVIISH SSHTWKNWIG LVLTSLGYGI PYKLLHQMAK PSVSDAGELL DGGFDMSTPG MCGYLHDVLY
101: ITCFVQVGSI ISGKFWYAYL VIPAFGAYKA SGLIKGLLSH GSEGGVEDEK TRKKREKMER KASRGQVVKT RSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)