AT1G42480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:15936297..15938692 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 20569.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.63 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||
| Length | 182 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKLVLFTAV IIAIFSHGSS VDDKCAACNA VAEELELQLL KEKPRNHLDM RNRLNSKGQR EGKVIDYRIS DLRVVDLLDG LCDRMQDYTL QKVEPKNRQW 101: VKVGNFDNLT NKQEAKAHAN DISTYCGRLL EETEDELGEV IKNGSLKAGE VRKVLCQTLS NHCRQSSETD SEDEEDDDAD EL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)