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AT5G50460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : secE/sec61-gamma protein transport protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
secE/sec61-gamma protein transport protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, protein transport, protein targeting; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158), Protein secE/sec61-gamma protein (InterPro:IPR001901); BEST Arabidopsis thaliana protein match is: secE/sec61-gamma protein transport protein (TAIR:AT4G24920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111WJ7eggNOG:KOG3498EMBL:AL035523EMBL:AL161562
EMBL:AY099662EMBL:AY128850EMBL:CP002687EnsemblPlants:AT4G24920.1
EnsemblPlants:AT5G50460EnsemblPlants:AT5G50460.1entrez:828594entrez:835114
ExpressionAtlas:P0DI74Gene3D:1.20.5.820GeneID:828594GeneID:835114
Genevisible:P0DI74GO:GO:0005789GO:GO:0006605GO:GO:0015450
GO:GO:0016021Gramene:AT4G24920.1Gramene:AT5G50460.1HAMAP:MF_00422
hmmpanther:PTHR12309InParanoid:P0DI74InterPro:IPR001901InterPro:IPR008158
InterPro:IPR022943InterPro:IPR023391KEGG:ath:AT4G24920KEGG:ath:AT5G50460
KO:K07342PaxDb:P0DI74Pfam:P0DI74Pfam:P0DI75
Pfam:PF00584PhylomeDB:P0DI74PIR:T05513PRIDE:P0DI74
PRO:PR:P0DI74PROSITE:PS01067ProteinModelPortal:P0DI74Proteomes:UP000006548
Reactome:R-ATH-381038RefSeq:NP_194222.1RefSeq:NP_568728.1scanprosite:PS01067
SMR:P0DI74STRING:3702.AT5G50460.1SUPFAM:0043251SUPFAM:SSF103456
TAIR:AT4G24920TIGRfam:TIGR00327TIGRFAMs:TIGR00327TMHMM:TMhelix
UniGene:At.23349UniGene:At.32310UniGene:At.49155UniProt:P0DI74
UniProt:P0DI75
Coordinates (TAIR10) chr5:-:20552168..20552509
Molecular Weight (calculated) 7737.71 Da
IEP (calculated) 10.49
GRAVY (calculated) 0.49
Length 69 amino acids
Sequence (TAIR10)
(BLAST)
1: MDAIDSVVDP LRDFAKDSIR LVKRCHKPDR KEFTKVAVRT AIGFVVMGFV GFFVKLIFIP INNIIVGAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)