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AT5G58710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
SwissProt : extracellular 16381842
SwissProt : endoplasmic reticulum 16381842
TAIR : plastid 18431481
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : rotamase CYP 7
Curator
Summary (TAIR10)
Encodes cyclophilin ROC7.
Computational
Description (TAIR10)
rotamase CYP 7 (ROC7); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, root development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 5 (TAIR:AT2G29960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G58710-MONOMEREC:5.2.1.8eggNOG:COG0652eggNOG:KOG0865
EMBL:AB020755EMBL:AF192490EMBL:AY048227EMBL:AY086471
EMBL:AY094017EMBL:CP002688EnsemblPlants:AT5G58710EnsemblPlants:AT5G58710.1
entrez:835985Gene3D:2.40.100.10GeneID:835985Genevisible:Q9SP02
GO:GO:0003755GO:GO:0005576GO:GO:0005783GO:GO:0006457
GO:GO:0009506GO:GO:0009507GO:GO:0042277GO:GO:0048364
Gramene:AT5G58710.1hmmpanther:PTHR11071hmmpanther:PTHR11071:SF291HOGENOM:HOG000065981
InterPro:IPR002130InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000
KEGG:ath:AT5G58710KO:K01802OMA:TISCAQAPANTHER:PTHR11071
PaxDb:Q9SP02Pfam:PF00160Pfam:Q9SP02Pfscan:PS50072
PhylomeDB:Q9SP02PIR:T50838PIRSF:PIRSF001467PRIDE:Q9SP02
PRINTS:PR00153PRO:PR:Q9SP02PROSITE:PS00170PROSITE:PS50072
ProteinModelPortal:Q9SP02Proteomes:UP000006548RefSeq:NP_200679.1scanprosite:PS00170
SMR:Q9SP02STRING:3702.AT5G58710.1SUPFAM:SSF50891TAIR:AT5G58710
tair10-symbols:ROC7UniGene:At.49190UniGene:At.7874UniProt:Q9SP02
Coordinates (TAIR10) chr5:+:23717840..23719495
Molecular Weight (calculated) 21962.50 Da
IEP (calculated) 9.62
GRAVY (calculated) -0.10
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSVTLLLW SLLLLGTLSA IQAKKSKENL KEITHKVYFD VEIDGKAAGR IVMGLFGKTV PKTVENFRAL CTGEKGIGKN GKALHYKGSS FHRIIPSFML
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)