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AT2G32920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
TAIR : plasma membrane 17317660
TAIR : vacuole 15539469
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24970193 (2013): endoplasmic reticulum
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15295017 (2004): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PDI-like 2-3
Curator
Summary (TAIR10)
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.
Computational
Description (TAIR10)
PDI-like 2-3 (PDIL2-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 2-2 (TAIR:AT1G04980.1); Has 34824 Blast hits to 18409 proteins in 2879 species: Archae - 382; Bacteria - 17291; Metazoa - 5423; Fungi - 1895; Plants - 2648; Viruses - 40; Other Eukaryotes - 7145 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G32920-MONOMEREC:5.3.4.1eggNOG:COG0526eggNOG:KOG0191
EMBL:AC003033EMBL:AY054270EMBL:AY072321EMBL:AY128728
EMBL:CP002685EnsemblPlants:AT2G32920EnsemblPlants:AT2G32920.1entrez:817854
Gene3D:3.40.30.10GeneID:817854Genevisible:O48773GO:GO:0003756
GO:GO:0005773GO:GO:0005783GO:GO:0005788GO:GO:0005794
GO:GO:0005886GO:GO:0006457GO:GO:0034976GO:GO:0045454
Gramene:AT2G32920.1hmmpanther:PTHR18929hmmpanther:PTHR18929:SF38HOGENOM:HOG000012631
InParanoid:O48773InterPro:IPR005788InterPro:IPR012336InterPro:IPR013766
InterPro:IPR017937KEGG:ath:AT2G32920KO:K09584OMA:AAICFIS
PaxDb:O48773Pfam:O48773Pfam:PF00085Pfscan:PS51352
PhylomeDB:O48773PIR:T01115PRIDE:O48773PRO:PR:O48773
PROSITE:PS00014PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:O48773
Proteomes:UP000006548RefSeq:NP_180851.1scanprosite:PS00194SMR:O48773
STRING:3702.AT2G32920.1SUPFAM:SSF52833SwissPalm:O48773TAIR:AT2G32920
tair10-symbols:ATPDI9tair10-symbols:ATPDIL2-3tair10-symbols:PDI9tair10-symbols:PDIL2-3
TIGRfam:TIGR01126TIGRFAMs:TIGR01126UniGene:At.12475UniProt:O48773
Coordinates (TAIR10) chr2:-:13962502..13965406
Molecular Weight (calculated) 47757.20 Da
IEP (calculated) 5.57
GRAVY (calculated) -0.14
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MYKSPLTLLT LLTICFGFFD LSSALYGSSS PVVQLTASNF KSKVLNSNGV VLVEFFAPWC GHCKALTPTW EKVANILKGV ATVAAIDADA HQSAAQDYGI
101: KGFPTIKVFV PGKAPIDYQG ARDAKSIANF AYKQIKGLLS DRLEGKSKPT GGGSKEKKSE PSASVELNAS NFDDLVIESN ELWIVEFFAP WCGHCKKLAP
201: EWKRAAKNLQ GKVKLGHVNC DVEQSIMSRF KVQGFPTILV FGPDKSSPYP YEGARSASAI ESFASELVES SAGPVEVTEL TGPDVMEKKC GSAAICFISF
301: LPDILDSKAE GRNKYLEMLL SVAEKFKKQP YSFMWVAAVT QMDLEKRVNV GGYGYPAMVA MNVKKGVYAP LKSAFELQHL LEFVKDAGTG GKGNVPMNGT
401: PEIVKTKEWD GKDGELIEED EFSLDELMGG DDAVGSKDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)