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AT3G05230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
SwissProt : (microsomes are not ordinarily present in living cells) 16381842
SwissProt : endoplasmic reticulum 16381842
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31520498 (2020): mitochondrion
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Signal peptidase subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Signal peptidase subunit; FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal peptidase 22kDa subunit (InterPro:IPR007653); BEST Arabidopsis thaliana protein match is: Signal peptidase subunit (TAIR:AT5G27430.1); Has 426 Blast hits to 426 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 138; Plants - 78; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
EC:3.4.-.-eggNOG:ENOG4110TZPeggNOG:KOG3372EMBL:AC009177
EMBL:AK227654EMBL:AY085431EMBL:BT009713EMBL:CP002686
EnsemblPlants:AT3G05230EnsemblPlants:AT3G05230.1entrez:819687ExpressionAtlas:Q9MA96
GeneID:819687Genevisible:Q9MA96GO:GO:0005618GO:GO:0005783
GO:GO:0005787GO:GO:0006465GO:GO:0008233GO:GO:0009506
GO:GO:0016021hmmpanther:PTHR12804HOGENOM:HOG000246793InParanoid:Q9MA96
InterPro:IPR007653KEGG:00261+3.4.-.-KEGG:00310+3.4.-.-KEGG:00550+3.4.-.-
KEGG:00780+3.4.-.-OMA:EHAKFRIPANTHER:PTHR12804PaxDb:Q9MA96
Pfam:PF04573Pfam:Q9MA96PhylomeDB:Q9MA96PIR:T52119
PIRSF:PIRSF016089PRIDE:Q9MA96PRO:PR:Q9MA96Proteomes:UP000006548
RefSeq:NP_566250.1STRING:3702.AT3G05230.1TAIR:AT3G05230TMHMM:TMhelix
UniGene:At.40711UniProt:Q9MA96
Coordinates (TAIR10) chr3:+:1492304..1493452
Molecular Weight (calculated) 19019.70 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.19
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MHTFGYRANA LLTFAVTALA FICAIASFSD KFSNQNPSAE IQILNINRFK KQSHGNDEVS LTLDISADLQ SLFTWNTKQV FVFVAAEYET PKNSLNQVSL
101: WDAIIPAKEH AKFRIQVSNK YRFIDQGQNL RGKDFNLTLH WHVMPKTGKM FADKIVLPGY SLPDAYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)