suba logo
AT5G27430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.984
What is SUBAcon?
Predictors External Curations
SwissProt : (microsomes are not ordinarily present in living cells) 16381842
SwissProt : endoplasmic reticulum 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Signal peptidase subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Signal peptidase subunit; FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal peptidase 22kDa subunit (InterPro:IPR007653); BEST Arabidopsis thaliana protein match is: Signal peptidase subunit (TAIR:AT3G05230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:3.4.-.-eggNOG:ENOG4110TZPeggNOG:KOG3372EMBL:AC007123
EMBL:AF057144EMBL:BT004137EMBL:BT005706EMBL:CP002688
EnsemblPlants:AT5G27430EnsemblPlants:AT5G27430.1entrez:832802GeneID:832802
Genevisible:Q53YF3GO:GO:0005618GO:GO:0005787GO:GO:0006465
GO:GO:0008233GO:GO:0016021Gramene:AT5G27430.1hmmpanther:PTHR12804
HOGENOM:HOG000246793InParanoid:Q53YF3InterPro:IPR007653KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-KEGG:ath:AT5G27430
KO:K12948OMA:ILAFICAPANTHER:PTHR12804PaxDb:Q53YF3
Pfam:PF04573Pfam:Q53YF3PhylomeDB:Q53YF3PIRSF:PIRSF016089
PRIDE:Q53YF3PRO:PR:Q53YF3Proteomes:UP000006548RefSeq:NP_198095.1
STRING:3702.AT5G27430.1TAIR:AT5G27430TMHMM:TMhelixUniGene:At.10570
UniProt:Q53YF3
Coordinates (TAIR10) chr5:+:9687470..9689185
Molecular Weight (calculated) 19218.90 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.18
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MHSFGYRANA LLTFAVTILA FICAIASFSD NFSNQNPSAQ IQILNINWFQ KQPHGNDEVS LTLNITADLQ SLFTWNTKQV FAFVAAEYET SKNALNQVSL
101: WDAIIPEKEH AKFWIQISNK YRFIDQGHNL RGKDFNLTLH WHVMPKTGKM FADKIVMSGY RLPNAYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)