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AT1G52600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:17644812 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Peptidase S24/S26A/S26B/S26C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis, signal peptide processing; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S26B, eukaryotic signal peptidase (InterPro:IPR001733), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT3G15710.1); Has 958 Blast hits to 958 proteins in 409 species: Archae - 89; Bacteria - 293; Metazoa - 225; Fungi - 153; Plants - 91; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.89eggNOG:COG0681eggNOG:KOG3342EMBL:AC008016
EMBL:AY064032EMBL:AY084305EMBL:AY096703EMBL:CP002684
EnsemblPlants:AT1G52600EnsemblPlants:AT1G52600.1entrez:841692Gene3D:2.10.109.10
GeneID:841692GO:GO:0005783GO:GO:0005886GO:GO:0006465
GO:GO:0008233GO:GO:0016021Gramene:AT1G52600.1hmmpanther:PTHR10806
hmmpanther:PTHR10806:SF7InterPro:IPR001733InterPro:IPR015927InterPro:IPR019759
InterPro:IPR028360KEGG:ath:AT1G52600KO:K13280MEROPS:S26.A04
OMA:QVDEMLGPANTHER:PTHR10806Pfam:PF00717PIR:G96566
PRINTS:PR00728Proteomes:UP000006548RefSeq:NP_175669.1STRING:3702.AT1G52600.1
SUPFAM:SSF51306TAIR:AT1G52600TIGRfam:TIGR02228TIGRFAMs:TIGR02228
TMHMM:TMhelixUniGene:At.27482UniProt:Q9SSR2
Coordinates (TAIR10) chr1:+:19590612..19592486
Molecular Weight (calculated) 20022.80 Da
IEP (calculated) 7.16
GRAVY (calculated) 0.31
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)