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AT1G47640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2053, membrane (InterPro:IPR019164); Has 204 Blast hits to 204 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41101UFeggNOG:KOG3236EMBL:AC007519EMBL:AK227286
EMBL:AY052722EMBL:BT004521EMBL:CP002684EnsemblPlants:AT1G47640
EnsemblPlants:AT1G47640.1entrez:841173GeneID:841173GO:GO:0005739
GO:GO:0005794GO:GO:0016021Gramene:AT1G47640.1hmmpanther:PTHR12869
hmmpanther:PTHR12869:SF0HOGENOM:HOG000005667InterPro:IPR019164KEGG:ath:AT1G47640
OMA:FVGEFMKPANTHER:PTHR12869Pfam:PF09767PhylomeDB:Q9SX96
PIR:D96517Proteomes:UP000006548RefSeq:NP_564509.1STRING:3702.AT1G47640.1
TAIR:AT1G47640TMHMM:TMhelixUniGene:At.11494UniProt:Q9SX96
Coordinates (TAIR10) chr1:-:17518409..17519998
Molecular Weight (calculated) 25310.20 Da
IEP (calculated) 8.46
GRAVY (calculated) 0.60
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLFHFFNCA ILTFGPHAVY YSATPLSEYD TLGTSVKAAV VYLATALVKL VCLATFLQVS ETEVFDPYQE ALKAMIGFID VAGLYYALAQ LTHRNISQNH
101: KFQAVGLGWA FADSVLHRLA PLWVGARGLE FTWDYVLQGL EANANLVFTI SLAALGSLMW LRKNKPKSLI PIIYTCAVII ATMPSITSYL KRVNGWHFPK
201: IVGFELATSL VMAFISCQLF ILCQRPSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)