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AT1G77350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 141 Blast hits to 141 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111ZNWeggNOG:KOG4615EMBL:AC078898EMBL:AY058172
EMBL:AY098975EMBL:CP002684EnsemblPlants:AT1G77350EnsemblPlants:AT1G77350.1
EnsemblPlants:AT1G77350.2entrez:844071GeneID:844071GO:GO:0005783
GO:GO:0016021Gramene:AT1G77350.1Gramene:AT1G77350.2hmmpanther:PTHR32001
HOGENOM:HOG000006286IntAct:Q9FVX3InterPro:IPR018614KEGG:ath:AT1G77350
OMA:AGMQIYSPfam:PF09775PhylomeDB:Q9FVX3PIR:E96802
Proteomes:UP000006548RefSeq:NP_001031293.1RefSeq:NP_565155.1STRING:3702.AT1G77350.1
TAIR:AT1G77350TMHMM:TMhelixUniGene:At.16871UniProt:Q9FVX3
Coordinates (TAIR10) chr1:+:29070497..29071545
Molecular Weight (calculated) 13050.20 Da
IEP (calculated) 9.23
GRAVY (calculated) 0.76
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGAVGTSML GSLIVFTVIL SLQEIYRGKL ASSELFTILG GFTSSLLFLF SLTFIGNFQE SSGIKSGWGA VILAEIIALI AAGTVHRVCI TTCFLFSAGL
101: LYEVNKISGY MLSKTESKSK RH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)