AT1G48230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.551 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nodulin MtN21 /EamA-like transporter family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT3G17430.1); Has 2334 Blast hits to 2327 proteins in 246 species: Archae - 0; Bacteria - 20; Metazoa - 455; Fungi - 393; Plants - 1228; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17806264..17808604 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40793.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.21 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.72 | ||||||||||||||||||||||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKMINKTLV LTYIYLLIYI ILSSGVILYN KWVLSPKYFN FPLPITLTMI HMGFSGFVAF LLIRVFKVVS PVKMTFEIYV TCVVPISAFF ASSLWFGNTA 101: YLHISVAFIQ MLKALMPVAT FLMAVVCGTD KARCDVFMNM VLVSVGVVVS SYGEINFNVI GTVYQVMGIF AEALRLVLTQ VLLQKKGLTL NPVTSLYYIA 201: PCSFVFLSLP WYVLEKPNID VSQIQFNFWI FFSNALCALA LNFSIFLVIG RTGAVTIRVA GVLKDWILIA LSTVIFPEST ITGLNITGYA IALCGVVMYN 301: YIKIKDVKAI QPTTDSLPDR ITKDWKEKNS SDGGSPRGLE LNDEEAPLIT SRLSHIGRTQ LGNHTAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)