AT1G71070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G39990.1); Has 951 Blast hits to 950 proteins in 117 species: Archae - 0; Bacteria - 44; Metazoa - 555; Fungi - 0; Plants - 318; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26807440..26809152 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44920.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.67 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAEKKWLFT LFSVVFLSVF LLLLYSISAF TSKPFPSSIR HGAHYPPAFA YYITGGRGDN DRISRLLLAV YHPRNRYLIH LGAEATDAER LALLSDLKSV 101: PAVNAFGNVD VLGKVDRLSE NGASKIASTL HAVSILLKLD PTWNWFIELS ALDYPLITQD DLSHVFASVN RSLNFIDHTS DLAWKESQRI KPIVVDPALY 201: LARRTQLFTA TEKRPTPDAF KVFTGSPWIV LSRPFLEYCI FGWDNLPRIL LMYFNNVILS EECYFHTVIC NAPEFSNTTV NGDLRYMIWD SPPKMEPHFL 301: TISDFDQMAQ SGAAFARQFK KDDPVLDMVD REILKRGRYR VTPGAWCSSH SSWWTDPCSE WDEVNIVKAG PQAKKLDETI TNFLDDLNSQ SNQCK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)