AT5G05820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotide-sugar transporter family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT3G11320.1); Has 3144 Blast hits to 3139 proteins in 327 species: Archae - 14; Bacteria - 156; Metazoa - 754; Fungi - 474; Plants - 1369; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1752106..1753857 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33901.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.83 | ||||||||||||||||||||||||||||||||||||||||
| Length | 309 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKMATNGRFF TIGLVASWYS SNIGVLLLNK YLLSNYGFKY PIFLTMCHMT ACSLLSYVAI AWLKMVPMQT IRSRVQFFKI AALSLVFCVS VVFGNISLRF 101: LPVSFNQAIG ATTPFFTAVF AYLMTRKKEA WLTYFTLVPV VTGVVIASGG EPSFHLFGFL MCIAATAARA LKSVLQGILL SSEGEKLNSM NLLLYMAPIA 201: VVLLLPATLI MEKNVVGITI ALARDDFRIV WYLLFNSALA YLVNLTNFLV TNHTSALTLQ VLGNAKGAVA VVVSILIFKN PVSVTGMLGY SLTVCGVILY 301: SEAKKRNKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)