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AT3G62560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ras-related small GTP-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: secretion-associated RAS super family 2 (TAIR:AT4G02080.1); Has 6828 Blast hits to 6826 proteins in 379 species: Archae - 2; Bacteria - 48; Metazoa - 3250; Fungi - 1258; Plants - 1101; Viruses - 0; Other Eukaryotes - 1169 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YIKIeggNOG:KOG0077EMBL:AK228049EMBL:AY070378
EMBL:AY117363EMBL:CP002686EnsemblPlants:AT3G62560EnsemblPlants:AT3G62560.1
entrez:825430Gene3D:3.40.50.300GeneID:825430GO:GO:0005525
GO:GO:0005783GO:GO:0005794GO:GO:0006886GO:GO:0016192
Gramene:AT3G62560.1hmmpanther:PTHR11711hmmpanther:PTHR11711:SF170HOGENOM:HOG000163690
InterPro:IPR005225InterPro:IPR006687InterPro:IPR006689InterPro:IPR027417
KEGG:ath:AT3G62560KO:K07953OMA:SWISSGFPfam:PF00025
Pfscan:PS51422PhylomeDB:Q8VYP7PRINTS:PR00328PROSITE:PS51422
Proteomes:UP000006548Reactome:R-ATH-204005Reactome:R-ATH-5694530Reactome:R-ATH-983170
RefSeq:NP_191815.1SMR:Q8VYP7STRING:3702.AT3G62560.1SUPFAM:SSF52540
TAIR:AT3G62560TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.28378
UniProt:Q8VYP7
Coordinates (TAIR10) chr3:+:23137539..23138880
Molecular Weight (calculated) 21940.50 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.13
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLVDWFYGV LATLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA NVPFLILGNK IDIPYAASED ELRYHLGLTS FTTGKGKVNL AGTNVRPLEV FMCSIVRKMG YGEGFKWVSQ YID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)