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AT1G13770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.508
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function, DUF647
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ROOT UV-B SENSITIVE 3 (RUS3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT3G45890.1); Has 450 Blast hits to 446 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 75; Plants - 194; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
BioGrid:23177DNASU:837937eggNOG:ENOG410XU74eggNOG:KOG4249
EMBL:AC027656EMBL:BT004280EMBL:BT005607EMBL:CP002684
EnsemblPlants:AT1G13770EnsemblPlants:AT1G13770.1EnsemblPlants:AT1G13770.2entrez:837937
ExpressionAtlas:Q84JB8GeneID:837937GO:GO:0016021hmmpanther:PTHR12770
hmmpanther:PTHR12770:SF22HOGENOM:HOG000030128InParanoid:Q84JB8InterPro:IPR006968
KEGG:ath:AT1G13770OMA:LTIFHMYPANTHER:PTHR12770PaxDb:Q84JB8
Pfam:PF04884Pfam:Q84JB8PhylomeDB:Q84JB8PIR:C86271
PRIDE:Q84JB8PRO:PR:Q84JB8Proteomes:UP000006548RefSeq:NP_001117280.1
RefSeq:NP_172832.3TAIR:AT1G13770tair10-symbols:RUS3TMHMM:TMhelix
UniGene:At.46705UniProt:Q84JB8
Coordinates (TAIR10) chr1:+:4721717..4724345
Molecular Weight (calculated) 48615.80 Da
IEP (calculated) 9.57
GRAVY (calculated) 0.08
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MREEQVSDCG SITLEEWNGS SSTKLFKTAT ITASSSLSIQ RSANRFNHVW RRVLQAFVPE GFPGSVTPDY VGFQLWDTLQ GLSTYTKMML STQALLSAIG
101: VGEKSATVIG ATFQWFLRDF TGMLGGILFT FYQGSNLDSN AKMWRLVADL MNDIGMLMDL LSPLFPSAFI VVVCLGSLSR SFTGVASGAT RAALTQHFAL
201: QDNAADISAK EGSQETMATM MGMSLGMLLA RFTSGNPMAI WLSFLSLTVF HMYANYRAVR CLVLNSLNFE RSSILLTHFI QTGQVLSPEQ VSSMEGVLPL
301: WATSLRSTNS KPLHKRVQLG VRVSSLPRLD MLQLLNGVGA SSYKNAKYLL AHIKGNVSVI LHKDSKPADV LKSYIHAIVL ANLMEKSTSF YSEGEAWIDK
401: HYDELLHKLR SGGWKTERLL SPSITWRANW ISHTSAAKFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)