AT1G13770.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.508 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein of unknown function, DUF647 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
ROOT UV-B SENSITIVE 3 (RUS3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT3G45890.1); Has 450 Blast hits to 446 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 75; Plants - 194; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:4721717..4724345 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48615.80 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.57 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||
Length | 440 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MREEQVSDCG SITLEEWNGS SSTKLFKTAT ITASSSLSIQ RSANRFNHVW RRVLQAFVPE GFPGSVTPDY VGFQLWDTLQ GLSTYTKMML STQALLSAIG 101: VGEKSATVIG ATFQWFLRDF TGMLGGILFT FYQGSNLDSN AKMWRLVADL MNDIGMLMDL LSPLFPSAFI VVVCLGSLSR SFTGVASGAT RAALTQHFAL 201: QDNAADISAK EGSQETMATM MGMSLGMLLA RFTSGNPMAI WLSFLSLTVF HMYANYRAVR CLVLNSLNFE RSSILLTHFI QTGQVLSPEQ VSSMEGVLPL 301: WATSLRSTNS KPLHKRVQLG VRVSSLPRLD MLQLLNGVGA SSYKNAKYLL AHIKGNVSVI LHKDSKPADV LKSYIHAIVL ANLMEKSTSF YSEGEAWIDK 401: HYDELLHKLR SGGWKTERLL SPSITWRANW ISHTSAAKFD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)