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AT5G47400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.679
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGXUeggNOG:ENOG4111X6ZEMBL:CP002688EnsemblPlants:AT5G47400
EnsemblPlants:AT5G47400.1entrez:834787GeneID:834787GO:GO:0016021
Gramene:AT5G47400.1hmmpanther:PTHR31801hmmpanther:PTHR31801:SF1InParanoid:F4JX48
iPTMnet:F4JX48KEGG:ath:AT5G47400OMA:DHPRAFFPaxDb:F4JX48
PRIDE:F4JX48Proteomes:UP000006548RefSeq:NP_199551.2STRING:3702.AT5G47400.1
TAIR:AT5G47400TMHMM:TMhelixUniGene:At.55421UniGene:At.70909
UniGene:At.73267UniProt:F4JX48
Coordinates (TAIR10) chr5:+:19229162..19232586
Molecular Weight (calculated) 97572.80 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.02
Length 862 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRGTFAFFF FLVLIFFLLF CPSLVFLFPF TRRDLSRLAF QTLLLRRKPL LYLSIKTLVS FSPSYLAMLP HSYTVDSLSQ SQDLASAILS ASTPSSISAA
101: CSSVESFLQS HTPDQCRHFF SVTFPSLICK IFGFGDTTAA SPAQSSSLRP NGWIDVISAA NDLDLAERVY NLLSPSGILM SSIFAVDKLA LVKYVFPTER
201: LPEYARFMLS SEKDRIALSN LCPFLKGKIE EDSVRGSLCE VRLNVFEYYM FWLSYYPVCR GNNEISAVNL NPIQKRNKFR LENWTLIKGF PGSNKRDSDQ
301: KLECNLYIRL LYSYLKAFVP VFDLNAHQPY RSSLLHYGNG YDGSVMTRAE FLVNVFVHYW LVENDFSPFP VVTAKSFGVA PPFRSAVEEI PPTCGLEEVV
401: KLLVKYLNLS WVTSGVGSEN YIEYGESPRW KTPTSGSSSH VANLSLRPLT SWNTHLQRPL YRYILRSFLF CPIGSSIKNA SQVFSIWVTY LEPWMISLDD
501: FSVFEPALSG SVKDMKKEDS YESRVCGYTP LWQSYVISNY LYYSSLVMHF IGFAHKFLHT DPEIITQMAL KVMSTLTSSK ELLVLMKNID KAFHSKQTGP
601: GNSKVNELSR FSPSIREQLK DWEDGLCESN ADGSYLHENW NKDLKLFSDG EDGGQQLLQL FILRAEAELQ TVSDKNLTEA LKCVDSLKSA VSNFFGGHVV
701: KPIAFFLEPD HPQKNRDELF KPRGAGNQTA GGVKYKGDWM TRPVSEDEVA LMAKLLINMS IWLNERLGLN KSETSNDKKE NSESVSYVDV SGEDVGNVAG
801: PGDAAKMLLR GMVMVCGTVL QLMRRFGIRV NLRVMASKKF LMLLFLYVLF LVVKRVVTRM IW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)