AT1G52620.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74580.1); Has 57261 Blast hits to 14054 proteins in 301 species: Archae - 5; Bacteria - 49; Metazoa - 836; Fungi - 993; Plants - 53641; Viruses - 0; Other Eukaryotes - 1737 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:19603828..19606287 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 92108.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.06 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 819 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSKTLLSRIK PLSNPHASNS FRSHLPITPR IKKLVSDTVS ILKTQQNWSQ ILDDCFADEE VRFVDISPFV FDRIQDVEIG VKLFDWLSSE KKDEFFSNGF 101: ACSSFLKLLA RYRIFNEIED VLGNLRNENV KLTHEALSHV LHAYAESGSL SKAVEIYDYV VELYDSVPDV IACNSLLSLL VKSRRLGDAR KVYDEMCDRG 201: DSVDNYSTCI LVKGMCNEGK VEVGRKLIEG RWGKGCIPNI VFYNTIIGGY CKLGDIENAY LVFKELKLKG FMPTLETFGT MINGFCKEGD FVASDRLLSE 301: VKERGLRVSV WFLNNIIDAK YRHGYKVDPA ESIGWIIAND CKPDVATYNI LINRLCKEGK KEVAVGFLDE ASKKGLIPNN LSYAPLIQAY CKSKEYDIAS 401: KLLLQMAERG CKPDIVTYGI LIHGLVVSGH MDDAVNMKVK LIDRGVSPDA AIYNMLMSGL CKTGRFLPAK LLFSEMLDRN ILPDAYVYAT LIDGFIRSGD 501: FDEARKVFSL SVEKGVKVDV VHHNAMIKGF CRSGMLDEAL ACMNRMNEEH LVPDKFTYST IIDGYVKQQD MATAIKIFRY MEKNKCKPNV VTYTSLINGF 601: CCQGDFKMAE ETFKEMQLRD LVPNVVTYTT LIRSLAKESS TLEKAVYYWE LMMTNKCVPN EVTFNCLLQG FVKKTSGKVL AEPDGSNHGQ SSLFSEFFHR 701: MKSDGWSDHA AAYNSALVCL CVHGMVKTAC MFQDKMVKKG FSPDPVSFAA ILHGFCVVGN SKQWRNMDFC NLGEKGLEVA VRYSQVLEQH LPQPVICEAS 801: TILHAMVEKA DTKEPVESP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)