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AT3G09040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 73401 Blast hits to 14698 proteins in 289 species: Archae - 0; Bacteria - 19; Metazoa - 251; Fungi - 280; Plants - 71776; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC009326EMBL:CP002686
EnsemblPlants:AT3G09040EnsemblPlants:AT3G09040.1entrez:820057Gene3D:1.25.40.10
GeneID:820057Genevisible:Q9SS83GO:GO:0005739Gramene:AT3G09040.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF677HOGENOM:HOG000237570InParanoid:Q9SS83
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G09040OMA:CSWIVVG
PaxDb:Q9SS83Pfam:PF01535Pfam:PF13041Pfam:Q9SS83
Pfscan:PS51375PhylomeDB:Q9SS83PRIDE:Q9SS83PRO:PR:Q9SS83
PROSITE:PS51375ProteinModelPortal:Q9SS83Proteomes:UP000006548RefSeq:NP_187516.1
SMR:Q9SS83STRING:3702.AT3G09040.1TAIR:AT3G09040TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.40178UniProt:Q9SS83
Coordinates (TAIR10) chr3:-:2761195..2764281
Molecular Weight (calculated) 115021.00 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.06
Length 1028 amino acids
Sequence (TAIR10)
(BLAST)
0001: MYFRVLLTPS SAMFDSFSFV RRLSYSPDLG RRIYGHVLPS HDQIHQRLLE ICLGQCKLFK SRKVFDEMPQ RLALALRIGK AVHSKSLILG IDSEGRLGNA
0101: IVDLYAKCAQ VSYAEKQFDF LEKDVTAWNS MLSMYSSIGK PGKVLRSFVS LFENQIFPNK FTFSIVLSTC ARETNVEFGR QIHCSMIKMG LERNSYCGGA
0201: LVDMYAKCDR ISDARRVFEW IVDPNTVCWT CLFSGYVKAG LPEEAVLVFE RMRDEGHRPD HLAFVTVINT YIRLGKLKDA RLLFGEMSSP DVVAWNVMIS
0301: GHGKRGCETV AIEYFFNMRK SSVKSTRSTL GSVLSAIGIV ANLDLGLVVH AEAIKLGLAS NIYVGSSLVS MYSKCEKMEA AAKVFEALEE KNDVFWNAMI
0401: RGYAHNGESH KVMELFMDMK SSGYNIDDFT FTSLLSTCAA SHDLEMGSQF HSIIIKKKLA KNLFVGNALV DMYAKCGALE DARQIFERMC DRDNVTWNTI
0501: IGSYVQDENE SEAFDLFKRM NLCGIVSDGA CLASTLKACT HVHGLYQGKQ VHCLSVKCGL DRDLHTGSSL IDMYSKCGII KDARKVFSSL PEWSVVSMNA
0601: LIAGYSQNNL EEAVVLFQEM LTRGVNPSEI TFATIVEACH KPESLTLGTQ FHGQITKRGF SSEGEYLGIS LLGMYMNSRG MTEACALFSE LSSPKSIVLW
0701: TGMMSGHSQN GFYEEALKFY KEMRHDGVLP DQATFVTVLR VCSVLSSLRE GRAIHSLIFH LAHDLDELTS NTLIDMYAKC GDMKGSSQVF DEMRRRSNVV
0801: SWNSLINGYA KNGYAEDALK IFDSMRQSHI MPDEITFLGV LTACSHAGKV SDGRKIFEMM IGQYGIEARV DHVACMVDLL GRWGYLQEAD DFIEAQNLKP
0901: DARLWSSLLG ACRIHGDDIR GEISAEKLIE LEPQNSSAYV LLSNIYASQG CWEKANALRK VMRDRGVKKV PGYSWIDVEQ RTHIFAAGDK SHSEIGKIEM
1001: FLEDLYDLMK DDAVVNPDIV EQGSLDCV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)