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AT3G09060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 58888 Blast hits to 14270 proteins in 310 species: Archae - 10; Bacteria - 38; Metazoa - 658; Fungi - 1156; Plants - 55027; Viruses - 0; Other Eukaryotes - 1999 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC009326EMBL:CP002686
EnsemblPlants:AT3G09060EnsemblPlants:AT3G09060.1entrez:820059Gene3D:1.25.40.10
GeneID:820059Genevisible:Q9SS81Gramene:AT3G09060.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF626HOGENOM:HOG000238473InParanoid:Q9SS81InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT3G09060OMA:NTLMEGFPaxDb:Q9SS81
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q9SS81
Pfscan:PS51375PhylomeDB:Q9SS81PRIDE:Q9SS81PRO:PR:Q9SS81
PROSITE:PS51375ProteinModelPortal:Q9SS81Proteomes:UP000006548RefSeq:NP_187518.1
SMR:Q9SS81STRING:3702.AT3G09060.1SUPFAM:SSF81901TAIR:AT3G09060
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65072UniProt:Q9SS81
Coordinates (TAIR10) chr3:-:2766367..2768430
Molecular Weight (calculated) 77905.80 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.13
Length 687 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVFPKSLSP KHVLKLLKSE KNPRAAFALF DSATRHPGYA HSAVVYHHIL RRLSETRMVN HVSRIVELIR SQECKCDEDV ALSVIKTYGK NSMPDQALDV
101: FKRMREIFGC EPAIRSYNTL LNAFVEAKQW VKVESLFAYF ETAGVAPNLQ TYNVLIKMSC KKKEFEKARG FLDWMWKEGF KPDVFSYSTV INDLAKAGKL
201: DDALELFDEM SERGVAPDVT CYNILIDGFL KEKDHKTAME LWDRLLEDSS VYPNVKTHNI MISGLSKCGR VDDCLKIWER MKQNEREKDL YTYSSLIHGL
301: CDAGNVDKAE SVFNELDERK ASIDVVTYNT MLGGFCRCGK IKESLELWRI MEHKNSVNIV SYNILIKGLL ENGKIDEATM IWRLMPAKGY AADKTTYGIF
401: IHGLCVNGYV NKALGVMQEV ESSGGHLDVY AYASIIDCLC KKKRLEEASN LVKEMSKHGV ELNSHVCNAL IGGLIRDSRL GEASFFLREM GKNGCRPTVV
501: SYNILICGLC KAGKFGEASA FVKEMLENGW KPDLKTYSIL LCGLCRDRKI DLALELWHQF LQSGLETDVM MHNILIHGLC SVGKLDDAMT VMANMEHRNC
601: TANLVTYNTL MEGFFKVGDS NRATVIWGYM YKMGLQPDII SYNTIMKGLC MCRGVSYAME FFDDARNHGI FPTVYTWNIL VRAVVNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)