AT1G13040.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 55149 Blast hits to 14680 proteins in 295 species: Archae - 3; Bacteria - 38; Metazoa - 581; Fungi - 873; Plants - 52114; Viruses - 0; Other Eukaryotes - 1540 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:4447647..4449200 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 58679.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.21 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 517 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MHQTLGAVRL AYRSRIANLV KSGMIDNAVQ VFDEMRHSSY RVFSFDYNRF IGVLVRESRF ELAEAIYWDM KPMGFSLIPF TYSRFISGLC KVKKFDLIDA 101: LLSDMETLGF IPDIWAFNVY LDLLCRENKV GFAVQTFFCM VQRGREPDVV SYTILINGLF RAGKVTDAVE IWNAMIRSGV SPDNKACAAL VVGLCHARKV 201: DLAYEMVAEE IKSARVKLST VVYNALISGF CKAGRIEKAE ALKSYMSKIG CEPDLVTYNV LLNYYYDNNM LKRAEGVMAE MVRSGIQLDA YSYNQLLKRH 301: CRVSHPDKCY NFMVKEMEPR GFCDVVSYST LIETFCRASN TRKAYRLFEE MRQKGMVMNV VTYTSLIKAF LREGNSSVAK KLLDQMTELG LSPDRIFYTT 401: ILDHLCKSGN VDKAYGVFND MIEHEITPDA ISYNSLISGL CRSGRVTEAI KLFEDMKGKE CCPDELTFKF IIGGLIRGKK LSAAYKVWDQ MMDKGFTLDR 501: DVSDTLIKAS CSMSADA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)