AT4G20090.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
embryo defective 1025 (EMB1025); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 50788 Blast hits to 13881 proteins in 299 species: Archae - 2; Bacteria - 48; Metazoa - 729; Fungi - 797; Plants - 47488; Viruses - 0; Other Eukaryotes - 1724 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:10868400..10870382 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 74128.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 660 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MPKCPIPIRI SFFSYFLKES RILSSNPVNF SIHLRFSSSV SVSPNPSMEV VENPLEAPIS EKMFKSAPKM GSFKLGDSTL SSMIESYANS GDFDSVEKLL 101: SRIRLENRVI IERSFIVVFR AYGKAHLPDK AVDLFHRMVD EFRCKRSVKS FNSVLNVIIN EGLYHRGLEF YDYVVNSNMN MNISPNGLSF NLVIKALCKL 201: RFVDRAIEVF RGMPERKCLP DGYTYCTLMD GLCKEERIDE AVLLLDEMQS EGCSPSPVIY NVLIDGLCKK GDLTRVTKLV DNMFLKGCVP NEVTYNTLIH 301: GLCLKGKLDK AVSLLERMVS SKCIPNDVTY GTLINGLVKQ RRATDAVRLL SSMEERGYHL NQHIYSVLIS GLFKEGKAEE AMSLWRKMAE KGCKPNIVVY 401: SVLVDGLCRE GKPNEAKEIL NRMIASGCLP NAYTYSSLMK GFFKTGLCEE AVQVWKEMDK TGCSRNKFCY SVLIDGLCGV GRVKEAMMVW SKMLTIGIKP 501: DTVAYSSIIK GLCGIGSMDA ALKLYHEMLC QEEPKSQPDV VTYNILLDGL CMQKDISRAV DLLNSMLDRG CDPDVITCNT FLNTLSEKSN SCDKGRSFLE 601: ELVVRLLKRQ RVSGACTIVE VMLGKYLAPK TSTWAMIVRE ICKPKKINAA IDKCWRNLCT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)