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AT4G20090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1025 (EMB1025); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 50788 Blast hits to 13881 proteins in 299 species: Archae - 2; Bacteria - 48; Metazoa - 729; Fungi - 797; Plants - 47488; Viruses - 0; Other Eukaryotes - 1724 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL021637EMBL:AL161552
EMBL:AY864350EMBL:CP002687EnsemblPlants:AT4G20090EnsemblPlants:AT4G20090.1
entrez:827754Gene3D:1.25.40.10GeneID:827754Genevisible:O49436
GO:GO:0009793Gramene:AT4G20090.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF460
HOGENOM:HOG000005779InParanoid:O49436InterPro:IPR002885InterPro:IPR011990
iPTMnet:O49436KEGG:ath:AT4G20090OMA:FRAYGKAPaxDb:O49436
Pfam:O49436Pfam:PF01535Pfam:PF12854Pfam:PF13041
Pfam:PF13812Pfscan:PS51375PhylomeDB:O49436PIR:H85227
PIR:T04893PRIDE:O49436PRO:PR:O49436PROSITE:PS51375
ProteinModelPortal:O49436Proteomes:UP000006548RefSeq:NP_193742.1SMR:O49436
STRING:3702.AT4G20090.1SUPFAM:SSF81901TAIR:AT4G20090tair10-symbols:EMB1025
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65409UniProt:O49436
Coordinates (TAIR10) chr4:-:10868400..10870382
Molecular Weight (calculated) 74128.10 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.04
Length 660 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKCPIPIRI SFFSYFLKES RILSSNPVNF SIHLRFSSSV SVSPNPSMEV VENPLEAPIS EKMFKSAPKM GSFKLGDSTL SSMIESYANS GDFDSVEKLL
101: SRIRLENRVI IERSFIVVFR AYGKAHLPDK AVDLFHRMVD EFRCKRSVKS FNSVLNVIIN EGLYHRGLEF YDYVVNSNMN MNISPNGLSF NLVIKALCKL
201: RFVDRAIEVF RGMPERKCLP DGYTYCTLMD GLCKEERIDE AVLLLDEMQS EGCSPSPVIY NVLIDGLCKK GDLTRVTKLV DNMFLKGCVP NEVTYNTLIH
301: GLCLKGKLDK AVSLLERMVS SKCIPNDVTY GTLINGLVKQ RRATDAVRLL SSMEERGYHL NQHIYSVLIS GLFKEGKAEE AMSLWRKMAE KGCKPNIVVY
401: SVLVDGLCRE GKPNEAKEIL NRMIASGCLP NAYTYSSLMK GFFKTGLCEE AVQVWKEMDK TGCSRNKFCY SVLIDGLCGV GRVKEAMMVW SKMLTIGIKP
501: DTVAYSSIIK GLCGIGSMDA ALKLYHEMLC QEEPKSQPDV VTYNILLDGL CMQKDISRAV DLLNSMLDRG CDPDVITCNT FLNTLSEKSN SCDKGRSFLE
601: ELVVRLLKRQ RVSGACTIVE VMLGKYLAPK TSTWAMIVRE ICKPKKINAA IDKCWRNLCT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)