AT5G14770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 76339 Blast hits to 14879 proteins in 308 species: Archae - 3; Bacteria - 87; Metazoa - 1237; Fungi - 1442; Plants - 70832; Viruses - 0; Other Eukaryotes - 2738 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4772881..4775697 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105322.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 938 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIRIWNNYKG KYRFFLSNCR SFSSIKRPQI PESEETSLSI TQRRFDPDLA PIKTRVYVSL FHTLFRLYLS CERLYGAART LSAMCTFGVV PDSRLWNSLI 101: HQFNVNGLVH DQVSLIYSKM IACGVSPDVF ALNVLIHSFC KVGRLSFAIS LLRNRVISID TVTYNTVISG LCEHGLADEA YQFLSEMVKM GILPDTVSYN 201: TLIDGFCKVG NFVRAKALVD EISELNLITH TILLSSYYNL HAIEEAYRDM VMSGFDPDVV TFSSIINRLC KGGKVLEGGL LLREMEEMSV YPNHVTYTTL 301: VDSLFKANIY RHALALYSQM VVRGIPVDLV VYTVLMDGLF KAGDLREAEK TFKMLLEDNQ VPNVVTYTAL VDGLCKAGDL SSAEFIITQM LEKSVIPNVV 401: TYSSMINGYV KKGMLEEAVS LLRKMEDQNV VPNGFTYGTV IDGLFKAGKE EMAIELSKEM RLIGVEENNY ILDALVNHLK RIGRIKEVKG LVKDMVSKGV 501: TLDQINYTSL IDVFFKGGDE EAALAWAEEM QERGMPWDVV SYNVLISGML KFGKVGADWA YKGMREKGIE PDIATFNIMM NSQRKQGDSE GILKLWDKMK 601: SCGIKPSLMS CNIVVGMLCE NGKMEEAIHI LNQMMLMEIH PNLTTYRIFL DTSSKHKRAD AIFKTHETLL SYGIKLSRQV YNTLIATLCK LGMTKKAAMV 701: MGDMEARGFI PDTVTFNSLM HGYFVGSHVR KALSTYSVMM EAGISPNVAT YNTIIRGLSD AGLIKEVDKW LSEMKSRGMR PDDFTYNALI SGQAKIGNMK 801: GSMTIYCEMI ADGLVPKTST YNVLISEFAN VGKMLQAREL LKEMGKRGVS PNTSTYCTMI SGLCKLCTHP DVEWNKKAMY LAEAKGLLKE MVEEKGYIPC 901: NQTIYWISAA FSKPGMKVDA ERFLKECYKK KNARSSNS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)