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AT5G15700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA/RNA polymerases superfamily protein
Curator
Summary (TAIR10)
Nucleus encoded plastid RNA polymerase. Localized in mitochondria and chloroplast.
Computational
Description (TAIR10)
DNA/RNA polymerases superfamily protein; FUNCTIONS IN: RNA polymerase activity, DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion, chloroplast, thylakoid membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 (TAIR:AT1G68990.1); Has 1300 Blast hits to 1280 proteins in 331 species: Archae - 0; Bacteria - 39; Metazoa - 134; Fungi - 224; Plants - 203; Viruses - 137; Other Eukaryotes - 563 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G15700-MONOMERBioCyc:ARA:GQT-761-MONOMERBioGrid:16700EC:2.7.7.6
eggNOG:COG5108eggNOG:KOG1038EMBL:AJ001037EMBL:AJ278248
EMBL:AL391144EMBL:CP002688EnsemblPlants:AT5G15700EnsemblPlants:AT5G15700.1
entrez:831424ExpressionAtlas:Q9LFV6Gene3D:1.10.1320.10Gene3D:1.10.287.260
GeneID:831424Genevisible:Q9LFV6GO:GO:0003677GO:GO:0003899
GO:GO:0005739GO:GO:0006351GO:GO:0009507hmmpanther:PTHR10102
hmmpanther:PTHR10102:SF3HOGENOM:HOG000241996InParanoid:Q9LFV6InterPro:IPR002092
InterPro:IPR024075InterPro:IPR029262iPTMnet:Q9LFV6KEGG:00230+2.7.7.6
KEGG:00240+2.7.7.6ncoils:CoilPANTHER:PTHR10102PaxDb:Q9LFV6
Pfam:PF00940Pfam:PF14700Pfam:Q9LFV6PhylomeDB:Q9LFV6
PIR:T51399PRIDE:Q9LFV6PRO:PR:Q9LFV6PROSITE:PS00489
PROSITE:PS00900ProteinModelPortal:Q9LFV6Proteomes:UP000006548RefSeq:NP_197074.1
scanprosite:PS00489scanprosite:PS00900SMART:SM01311SMR:Q9LFV6
STRING:3702.AT5G15700.2SUPFAM:SSF56672TAIR:AT5G15700UniGene:At.113
UniProt:Q9LFV6
Coordinates (TAIR10) chr5:-:5115793..5121609
Molecular Weight (calculated) 114527.00 Da
IEP (calculated) 8.59
GRAVY (calculated) -0.42
Length 1011 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI
0101: TRREEFSKSE RCLSGTLARG YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR QVKIETEEWE RAAAEYMELL
0201: TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT
0301: FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH
0401: TFKVAKGSMN SGRKYGVIEC DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA PKGQLQPVFE ALDTLGSTKW
0501: RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP
0601: HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP
0701: ETVLSHIPIH QDGSCNGLQH YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ VDRKLVKQTV MTSVYGVTYI
0801: GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET
0901: DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL
1001: KVVLDSPYFF N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)