AT2G18900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT3G26480.1); Has 4620 Blast hits to 3140 proteins in 363 species: Archae - 18; Bacteria - 1955; Metazoa - 712; Fungi - 1091; Plants - 306; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8188491..8192409 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88017.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 804 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRGGRSYVT SPPSFSNDAK KLLVCTGNTV SVFSAATGLQ ITSLEGHTAP VTTLIVVPAS SPAQKILCYC WTASLDGTIR HWDFSGPELL KTIDAQLPIY 101: SMVIPSLLSE PQQIDKRREL SGKLVAYVSV EDISVVNQGS KELRGHIRRF NLAKSRIPRG DTLKETAEPE SIVISPSGEF FGIRHKCKIH IWDVPSGGSR 201: HAVSRKMTLH HTKVINAFAF HPTERVIAAG DVTGRVLIWR GFGNRKLALG NQKKKVRAMV DLDNAGVRGE DDAESCTTWH WHSAEVNVLN FSSDGAYLYS 301: GGREGVLVVW QLDTGKKKFL PRIGSPLLYF MWSPDPTLSS VVCADNQIHL LKMPSMEILR TISGIKPPPS LPRMYEGLAS TVAFDRSSGI AALCTENYCV 401: QLYNLLNDRG ISEIQVCERN HQPGDEITVV VTAVALSLDG SVMSTTEVKL PEDGIGGLVS LKFWASEPDS KTFTLSTIVY EPHRDAGVSA IVFHPTRSMA 501: VSTSFGGDFK IWVCNSDKNQ TDKDSSWICH AVGSYKKKPM TAAAFSGDGT VMAVAAENVI TLWNPDKNIL LSVLGSTLTP ITKLCFAGKS EFLVAASHIP 601: RPELSVWNTS KLSLSWSYGL RIEAVTSAVD SSAFAVLAVI PKTFKTDESK ENIFRGRDGA ILLFNGSDPK PVSIWTVMKA RGGSISFLEG DKSQLRLAYV 701: NGSHEYVVFD PNSDESHERS AVDYDGLAGL EETGDAGYTS LYGQLPDYDK KRMEDVESLG TPFVSSERPW ETIFSGSTLN FPPLQKLCAE FFESLMEKRT 801: AVVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)