AT1G30240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 165 Blast hits to 164 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10641241..10645838 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89738.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.96 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||
| Length | 825 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASFERFDDM CDLRLKPKIL RNLLSEYVPN EKQPLTNFLS LSKVVSTIST HKLLSESPPA SIDQKLHAKS KSAVDDWVAR LSALISSDMP DKSWVGICLI 101: GVTCQECSSD RFFKSYSVWF NSLLSHLKNP ASSRIVRVAS CTSISDLLTR LSRFSNTKKD AVSHASKLIL PIIKLLDEDS SEALLEGIVH LLSTIVLLFP 201: AAFHSNYDKI EAAIASKIFS AKTSSNMLKK FAHFLALLPK AKGDEGTWSL MMQKLLISIN VHLNNFFQGL EEETKGTKAI QRLTPPGKDS PLPLGGQNGG 301: LDDASWNSEQ LIVSRVSALM FCTSTMLTTS YKSKINIPVG SLLSLVERVL LVNGSLPRAM SPFMTGIQQE LVCAELPALH SSALELLCAT LKSIRSQLLP 401: YAASVVRLVS SYFRKCSLPE LRIKLYSITT TLLKSMGMAM QLAQEVVINA SVDLDQTSLE AFDVASSKNP SLTNGALLQA CSKKRKHSGV EAENSVFELR 501: IPHNHLRSPI SLKIASLEAL ETLLTIGGAL GSDSWRESVD NLLLTTATNA CEGRWANAET YHCLPNKSTT DLVEFQLAAL RAFSASLVSP SRVRPAFLAE 601: GLELFRTGKL QAGMKVAGFC AHALMSLEVV IHPRALPLDG LPTLSNRFPE SNSFGSEKHN TPNLNKLNVI AHDGDDLGNR WQAKADVPSN NAIQRTLDTT 701: LPLQESNRLK VGNDLATVVS LSVQDHTDIV ASENGQQADV PEKVPEESLG PVTDKDVTAP KDGYEEVVSG TQEGEDLAVK DSLMEEASIG KKIESLGESD 801: DDPIPSLQEG DFLSSSSDSD SDIES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)