AT4G04940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:2511212..2517052 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102223.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 910 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIFEPFRAI GYITSTVPFS VQRLGTETFV TVSVGKAFQI YNCAKLNLVI ISPQLPKKIR ALASYRDYTF VAFGNEIAVF RRAHQVATWS KHVAKVDLLL 101: VFGEHVLSLD VEGNMFIWAF KGIEEHLAPI GNLQLTGKFT PTSIVHPDTY LNKVLVGSQE GPLQLWNINT KKMLYQFKGW GSSVTSCVSS PALDVVAIGC 201: ADGKIHVHNI KLDEEIVTFE HASRGAVTAL SFSTDGRPLL ASGGSFGVIS IWNLNKKRLQ SVIRDAHDSS IISLNFLANE PVLMSASADN SLKMWIFDTN 301: DGDPRLLRFR SGHSAPPLCI RFYSNGRHIL SAGQDRAFRL FSVIQEQQSR ELSQRHISRR AKKLRLKEEE LKLKPVVSFD CAEIRERDWC NVVTCHMDTA 401: EAYVWRLQNF VLGEHILKPC PENPTPIKAC AISACGNFAV VGTAGGWIER FNLQSGISRG SYFDMSEKRR YAHDGEVIGV ACDSTNTLMI SAGYHGDLKV 501: WDFKKRELKS QWDVGCSLVK IVYHRVNGLL ATVADDFVIR LYDVVTLKMV REFRGHTDRI TDLCFSEDGK WVISSSMDGS LRIWDVILAK QIDGVHVDVP 601: ITALSLSPNM DVLATAHSDQ NGVYLWVNQS MFSGLPSVES YASGKDVVNV KLPSVSALTS SEADDDMDRQ VLENSEALQA SSFSISQKQI PELVTLSLLP 701: KSQWQSLINL DIIKARNKPI EPPKKPEKAP FFLPSIPSLS GDILFKANDS EADGENEENN KKDQNSMKNF DALESPFSKH LKSSWDSKHF LDFTNYMKSL 801: SPSALDMELR MLEIIDEDVE EELIKRPEFI LIGQLLDYFI NEVSCKNDFE FMQAVVKLFL KIHGETIRCH PSLQEKAKKL LETQSLVWQK MEKLFQSTRC 901: IVTFLSNSQF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)