AT3G57940.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (TAIR:AT1G10490.1); Has 1409 Blast hits to 1357 proteins in 630 species: Archae - 151; Bacteria - 717; Metazoa - 171; Fungi - 150; Plants - 51; Viruses - 3; Other Eukaryotes - 166 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:21449560..21455834 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 115482.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1028 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MRKKVDERIR TLIENGVKLR HRSMFVIIGD KSRDQIVNLH HMLSKAVIKC NPSVLWCYKD KLDISSHKQK RSKQLKRLRE RGQLDPEKLD AFSRLLDVGR 0101: VTHCLYKDSE RILGNTFGMC ILQDFEALTP NLLARTIETV EGGGLVVLIL RSLTSLTSLC TMVMDVHDRF RTESHSEAAG RFNERFLLSL ASCKACVVMD 0201: DELNILPLSS HIRSITQVPT EKDSEGLSEA ERDLKSLKED LSDDFPVGPL IKKCCTLDQG KAVVTFFDAI LDKALRSIVA LIASRGRGKS AALGLAVAGA 0301: VAAGYSNIYI TAPSPDNLKT FFEFVCKGFD ALEYKEHLDY DVVKSANPDF KKAVVRINIF KQHRQTIQYI QPHEHEKLSQ VELLVIDEAA AIPLPVVKSL 0401: LGPYLVFLSS TVSGYEGTGR SLSLKLLQQL DEQSRAPATG LEGSGCLFKK IELTESIRYG SGDPIESWLN GLLCLDVATC LPNPACHPSP SQCDLYYVNR 0501: DTLFSYHKDS ELFLQRMMAL CVSSHYKNSP NDLQLLADAP AHHLFVLLGP VDESQNKIPD ILCVIQVCLE GKISENSALQ SLRDGHSPYG DQIPWKFCEQ 0601: FRDTEFPGFS GARIVRIAVH PNAMKMGYGS AAVELLTRYF EGQIAPISEA EDKVDVEHAP IKVTEAAEKV SMLEEQVKPR TNLPPLLVPL HDRRPEKLHY 0701: IGVSFGLTLD LFRFWRKHNF APFYVSQIPS AVTGEHTCML LKPLKNDELE VNESDELGFF TPFYKDFKIR FSKLLSDKFK KMDYKLAMSV LNPKINFAEV 0801: DSSGSSSGGF LKTLNGILSP YDMERLRAYT ENLTDFNLVY DICKTLAHQY FEEKLPVSLS YVQASILLCL GLQETDFSSI ERQMQLERGQ IHSLLLKVAR 0901: ELYKYLNGVA GKEIKSALPR LKERELTAHN VSVDDDIREG AKQVEEQMKK EKIEGLMDSE LQQYVIGDKE AEALQHSKIS SSGIISVKST KSENENGFDK 1001: STKKRSSDKR SSSSSKSKSS KKRKSLKE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)