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AT3G57940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (TAIR:AT1G10490.1); Has 1409 Blast hits to 1357 proteins in 630 species: Archae - 151; Bacteria - 717; Metazoa - 171; Fungi - 150; Plants - 51; Viruses - 3; Other Eukaryotes - 166 (source: NCBI BLink).
Protein Annotations
BioGrid:10278EC:2.3.1.-eggNOG:COG1444eggNOG:KOG2036
EMBL:AK229357EMBL:AL132977EMBL:CP002686EnsemblPlants:AT3G57940
EnsemblPlants:AT3G57940.1entrez:824963ExpressionAtlas:Q9M2Q4GeneID:824963
Genevisible:Q9M2Q4GO:GO:0005524GO:GO:0005730GO:GO:0006364
GO:GO:0008033GO:GO:0008080HAMAP:MF_03211hmmpanther:PTHR10925
hmmpanther:PTHR10925:SF5HOGENOM:HOG000210833InParanoid:Q9M2Q4InterPro:IPR000182
InterPro:IPR007807InterPro:IPR013562InterPro:IPR027992InterPro:IPR032672
iPTMnet:Q9M2Q4MINT:MINT-8060991OMA:WESAFSRPANTHER:PTHR10925
PaxDb:Q9M2Q4Pfam:PF05127Pfam:PF08351Pfam:PF13718
Pfam:PF13725Pfam:Q9M2Q4PhylomeDB:Q9M2Q4PIR:T46016
PRIDE:Q9M2Q4PRO:PR:Q9M2Q4ProteinModelPortal:Q9M2Q4Proteomes:UP000006548
RefSeq:NP_191353.2STRING:3702.AT3G57940.1TAIR:AT3G57940UniGene:At.34782
UniProt:Q9M2Q4
Coordinates (TAIR10) chr3:+:21449560..21455834
Molecular Weight (calculated) 115482.00 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.28
Length 1028 amino acids
Sequence (TAIR10)
(BLAST)
0001: MRKKVDERIR TLIENGVKLR HRSMFVIIGD KSRDQIVNLH HMLSKAVIKC NPSVLWCYKD KLDISSHKQK RSKQLKRLRE RGQLDPEKLD AFSRLLDVGR
0101: VTHCLYKDSE RILGNTFGMC ILQDFEALTP NLLARTIETV EGGGLVVLIL RSLTSLTSLC TMVMDVHDRF RTESHSEAAG RFNERFLLSL ASCKACVVMD
0201: DELNILPLSS HIRSITQVPT EKDSEGLSEA ERDLKSLKED LSDDFPVGPL IKKCCTLDQG KAVVTFFDAI LDKALRSIVA LIASRGRGKS AALGLAVAGA
0301: VAAGYSNIYI TAPSPDNLKT FFEFVCKGFD ALEYKEHLDY DVVKSANPDF KKAVVRINIF KQHRQTIQYI QPHEHEKLSQ VELLVIDEAA AIPLPVVKSL
0401: LGPYLVFLSS TVSGYEGTGR SLSLKLLQQL DEQSRAPATG LEGSGCLFKK IELTESIRYG SGDPIESWLN GLLCLDVATC LPNPACHPSP SQCDLYYVNR
0501: DTLFSYHKDS ELFLQRMMAL CVSSHYKNSP NDLQLLADAP AHHLFVLLGP VDESQNKIPD ILCVIQVCLE GKISENSALQ SLRDGHSPYG DQIPWKFCEQ
0601: FRDTEFPGFS GARIVRIAVH PNAMKMGYGS AAVELLTRYF EGQIAPISEA EDKVDVEHAP IKVTEAAEKV SMLEEQVKPR TNLPPLLVPL HDRRPEKLHY
0701: IGVSFGLTLD LFRFWRKHNF APFYVSQIPS AVTGEHTCML LKPLKNDELE VNESDELGFF TPFYKDFKIR FSKLLSDKFK KMDYKLAMSV LNPKINFAEV
0801: DSSGSSSGGF LKTLNGILSP YDMERLRAYT ENLTDFNLVY DICKTLAHQY FEEKLPVSLS YVQASILLCL GLQETDFSSI ERQMQLERGQ IHSLLLKVAR
0901: ELYKYLNGVA GKEIKSALPR LKERELTAHN VSVDDDIREG AKQVEEQMKK EKIEGLMDSE LQQYVIGDKE AEALQHSKIS SSGIISVKST KSENENGFDK
1001: STKKRSSDKR SSSSSKSKSS KKRKSLKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)