AT1G10490.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (TAIR:AT3G57940.1); Has 1351 Blast hits to 1310 proteins in 616 species: Archae - 139; Bacteria - 698; Metazoa - 170; Fungi - 143; Plants - 51; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:3453589..3459925 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 115626.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1028 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MRKKVDERIR TLIENGVKLR HRSMFVIIGD KARDQIVNLH HILSKSVVKS NPSVLWCYKN RLDISSHNKK RAKQLKKMKE RGQLDPEKLD AFSLFLDVVD 0101: VTHCLYKDSE RILGNTFGIC ILQDFEALTP NLLARTIETV EGGGLVVLLL QSLASLTSLC TMVMDVHDRF RTESHSEASG RFNERFLLSL ASCKACVVMD 0201: DELNLLPLSS HIKSITKVPT KEDSEALSEA ERDLKSLKDA LNDDFPVGPL INKCCTLDQG KAVVTFFDAI LDKTLRSIVA LIASRGRGKS AALGLAVAGA 0301: VAAGYSNIYV TAPSPDNLKT VFEFVCKGFD ALEYKEHLEY DVVRSVNPEF NKAIVRINIF KQHRQTIQYI QPHEHEKLSQ VELLVIDEAA AIPLPVVKSL 0401: LGPYLVFLSS TVSGYEGTGR SLSLKLLQQL EEQSRAPVTG VEGSLSGCLF KKIELSESIR YASGDPIESW LNGLLCLDVA NCLPNPACHP LPSQCDLYYV 0501: NRDTLFSYHK DSELFLQRMM ALCVSSHYKN SPNDLQLLSD APAHHLFVLL GPVDESKNQL PDILCVIQVC LEGQISRKSA EKSLREGHSP HGDQIPWKFC 0601: EQFRDVVFPK LSGARIVRIA VHPNAMKMGY GSAAVELLTR YFEGQLASIS EGDDELEVEP SPVRVTEAAA KVSLLEEQIK PRANLPPLLV PLRDRRPERL 0701: HYIGVSFGLT LDLFRFWRKH KFAPFYISQI PSAVTGEHTC MLLKPLTLSN DEFEVDESDE LGFFAPFYKD FRIRFSKLLS DKFKKMDYKL AMSVLNPKIN 0801: FPEVDLTGNS PDGFLKKLDG VLSPYDMERF RAYTANLVDF NLVYDICKTL AHHYFQEKLP VSLSYVQASV LLCLGLQESD FSSIERQMQL ERGQIYSLLL 0901: KVGKKLYKYL NGIATKELES TLPRLKDRVL EPHKVSVDED LREGAKEVEE QMRARIEELL DPELLDQFAI GDKEAEALQK SKISSSGLIS IESTKTDNKK 1001: EKPSGFDKSA KKRGNDKHSS TSNKKRRA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)