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AT1G10490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (TAIR:AT3G57940.1); Has 1351 Blast hits to 1310 proteins in 616 species: Archae - 139; Bacteria - 698; Metazoa - 170; Fungi - 143; Plants - 51; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Protein Annotations
BioGrid:22829EC:2.3.1.-eggNOG:COG1444eggNOG:KOG2036
EMBL:AC007067EMBL:AK226604EMBL:CP002684EnsemblPlants:AT1G10490
EnsemblPlants:AT1G10490.1entrez:837589GeneID:837589Genevisible:Q9XIK4
GO:GO:0005524GO:GO:0005730GO:GO:0006364GO:GO:0008033
GO:GO:0008080Gramene:AT1G10490.1HAMAP:MF_03211hmmpanther:PTHR10925
hmmpanther:PTHR10925:SF5HOGENOM:HOG000210833InParanoid:Q9XIK4InterPro:IPR000182
InterPro:IPR007807InterPro:IPR013562InterPro:IPR027992InterPro:IPR032672
KEGG:ath:AT1G10490KO:K14521MINT:MINT-8067452ncoils:Coil
OMA:PLINKCCPANTHER:PTHR10925PaxDb:Q9XIK4Pfam:PF05127
Pfam:PF08351Pfam:PF13718Pfam:PF13725Pfam:Q9XIK4
PhylomeDB:Q9XIK4PRIDE:Q9XIK4PRO:PR:Q9XIK4ProteinModelPortal:Q9XIK4
Proteomes:UP000006548RefSeq:NP_172519.1STRING:3702.AT1G10490.1TAIR:AT1G10490
UniGene:At.23708UniGene:At.66809UniProt:Q9XIK4
Coordinates (TAIR10) chr1:+:3453589..3459925
Molecular Weight (calculated) 115626.00 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.23
Length 1028 amino acids
Sequence (TAIR10)
(BLAST)
0001: MRKKVDERIR TLIENGVKLR HRSMFVIIGD KARDQIVNLH HILSKSVVKS NPSVLWCYKN RLDISSHNKK RAKQLKKMKE RGQLDPEKLD AFSLFLDVVD
0101: VTHCLYKDSE RILGNTFGIC ILQDFEALTP NLLARTIETV EGGGLVVLLL QSLASLTSLC TMVMDVHDRF RTESHSEASG RFNERFLLSL ASCKACVVMD
0201: DELNLLPLSS HIKSITKVPT KEDSEALSEA ERDLKSLKDA LNDDFPVGPL INKCCTLDQG KAVVTFFDAI LDKTLRSIVA LIASRGRGKS AALGLAVAGA
0301: VAAGYSNIYV TAPSPDNLKT VFEFVCKGFD ALEYKEHLEY DVVRSVNPEF NKAIVRINIF KQHRQTIQYI QPHEHEKLSQ VELLVIDEAA AIPLPVVKSL
0401: LGPYLVFLSS TVSGYEGTGR SLSLKLLQQL EEQSRAPVTG VEGSLSGCLF KKIELSESIR YASGDPIESW LNGLLCLDVA NCLPNPACHP LPSQCDLYYV
0501: NRDTLFSYHK DSELFLQRMM ALCVSSHYKN SPNDLQLLSD APAHHLFVLL GPVDESKNQL PDILCVIQVC LEGQISRKSA EKSLREGHSP HGDQIPWKFC
0601: EQFRDVVFPK LSGARIVRIA VHPNAMKMGY GSAAVELLTR YFEGQLASIS EGDDELEVEP SPVRVTEAAA KVSLLEEQIK PRANLPPLLV PLRDRRPERL
0701: HYIGVSFGLT LDLFRFWRKH KFAPFYISQI PSAVTGEHTC MLLKPLTLSN DEFEVDESDE LGFFAPFYKD FRIRFSKLLS DKFKKMDYKL AMSVLNPKIN
0801: FPEVDLTGNS PDGFLKKLDG VLSPYDMERF RAYTANLVDF NLVYDICKTL AHHYFQEKLP VSLSYVQASV LLCLGLQESD FSSIERQMQL ERGQIYSLLL
0901: KVGKKLYKYL NGIATKELES TLPRLKDRVL EPHKVSVDED LREGAKEVEE QMRARIEELL DPELLDQFAI GDKEAEALQK SKISSSGLIS IESTKTDNKK
1001: EKPSGFDKSA KKRGNDKHSS TSNKKRRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)