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AT1G63810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Nrap protein (InterPro:IPR005554); Has 396 Blast hits to 382 proteins in 182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPP9eggNOG:KOG2054EMBL:AK226717EMBL:CP002684
EnsemblPlants:AT1G63810EnsemblPlants:AT1G63810.1entrez:842684GeneID:842684
GO:GO:0005829Gramene:AT1G63810.1hmmpanther:PTHR17972HOGENOM:HOG000030035
InterPro:IPR005554KEGG:ath:AT1G63810KO:K14544OMA:HQAFSVV
PANTHER:PTHR17972Pfam:PF03813PhylomeDB:Q0WVM5Proteomes:UP000006548
RefSeq:NP_176566.3STRING:3702.AT1G63810.1TAIR:AT1G63810UniGene:At.27831
UniProt:Q0WVM5
Coordinates (TAIR10) chr1:-:23669690..23675542
Molecular Weight (calculated) 120157.00 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.26
Length 1053 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEADTKTDSR TLKVNDLLKD ARLDYDSLRK LVDDTVSSIK EAIDGIPEKF QVTSELAPSF VEDIGADKEV EFSFKKPNGF NLCGSYSICG MAKPDTSVDL
0101: LVHLPKECFY EKDYMNHRYH AKRCLYLCVI EKHLLSSSSI EKVVWSTLHN EARKPVLVVF PAKKLDQFPG FSIRLIPSAT SLFSVAKLSI SRNNVRSVTA
0201: DGVPEPTPTY NSSILEDMFL EENSEFLKKT FSEWKELSDA LILLKIWARQ RSSIYVHDCL NGFLISVILS YLATHSKINK ALSALDIFRV TLDFIATSKL
0301: WERGLYLPPQ SEIRVSKEEK MQFRELFPVV ICDSSTFVNL AFRMTSVGFL ELQDEASLTL KCMEKLRDGG FEEIFMTKID YPVKYDHCIR LQLKGKTAVS
0401: LSGFCLDKEC WRLYEQKVHS LLLEGLGDRA KSIRVVWRNT NQDWHVESGL SVLDREPLFI GISVSSTEKA YRTVDIGPDA ENKIEALRFR KFWGEKSDLR
0501: RFKDGRISES TVWETQQWTK HLIMKQIVEY ILKRHLSLTS DDIVQLVDQL DFSLNYGGKD PISLSGNLVQ AYEVLSKCLR EIEGIPLKVS SVQSLDSALR
0601: FTSVFPPEPH PVACEKIDSR RLQKLIPSCI PAMEVMIQLE GSGNWPMDDL AVEKTKSAFL LKIAESLQNV KGIPCTATED NVDVFIGGYA FRLRILHERG
0701: LSLVKREIGV DPVKHVSSTD KMLFIRSQHA SMINGLQGRF PVYAPVARLA KRWVSAHLFS GCLAEEAIEL LVAYLFLTPL PLGVPSSRIN GFLRFLRLLA
0801: DYEWMFYPLI VDINNDFGRN DEKEINDNFM SSRKGYEEDK QNISSAMFLA APYDKASEAW TSTSPNLLEQ KRLVAYARSS ANVLSKMVLQ EHNDSVQWEC
0901: LFRTPLNNYD AVILLHRDKL PYPRRLLFPS ELNQGKHVAR GKASRLFNPF MSPGDLKRSH EELKNKLMVD FEPTKCLLSG LQEEFGTLKP WYDHIGGDAI
1001: GLTWNKHNSK KRERDEEEEE EEESNPMEML KAVGEMGKGL VRDIYLLKPP RFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)